Afipia carboxidovorans OM4: OCA4_c22250
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Entry
OCA4_c22250 CDS
T01967
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oco03032
]
OCA4_c22250 (topA)
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c22250 (topA)
Enzymes [BR:
oco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OCA4_c22250 (topA)
DNA replication proteins [BR:
oco03032
]
Prokaryotic type
DNA Topoisomerases
OCA4_c22250 (topA)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OCA4_c22250 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AEI03351
LinkDB
All DBs
Position
2414287..2417028
Genome browser
AA seq
913 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGSSYEVLASYGHVRDLPAKNGSVDPDANFQMIWETDPKAAS
RLNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQKVERVVFNAITKQSV
TEAMNNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
EIEIEKFVAREYWSLVATLATPRNDTFEARLVGADGKKIQRLDIGTGAEAEDFKKALETA
AFTVSLVEAKPARRNPQAPFTTSTLQQEASRKLGFAPSHTMRIAQRLYEGIDIGGETTGL
ITYMRTDGVSIAPEAIPALRKVIAEEYGSNYVPSAPRQYTSKAKNAQEAHEAIRPTDVSR
RPAKLKARLDNDQYRLYELIWMRAIASQMESAELERTTVDITAKAGARTLELRASGQVVK
FDGFLAVYQEGRDDDPEDEESRRLPAMSEGEALKRESLAVTQHFTEPPPRYSEASLVKRM
EELGIGRPSTYASILQVLKDRGYVKLEKKRLSAEDKGRVVVAFLQKFFARYVEFDFTADL
EEQLDKISNNEVAWKNVLSDFWRDFIGAVDEIKDVKVSEVLDVLDAMLGEHIYEPRADGG
DPRQCPSCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAASSGTSDRVLGKDPKTNLDVA
VKAGRFGPYIQLGEPNDYAEGEKPKRAGIPKNMSPADVELDLAIKLLSLPRDVGPHPEDG
EIITAGIGRFGPFVRHGKTYASLEAGDDVYTIGLNRAVTLIAEKIAKGPSRRFGADPGKE
VGDYPARGGKIMLKKGRYGAYVTIDGINATIPDDKEPDQITLEEAIALIEARAAKGGKAK
RAPKKAAAKKAAPKKKATAKKKADSEPESGAKPAKKAATRTAPKARTSTAKPAAKTAAKA
KPTAKKSAGKARG
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgtcattgtggagtcgcctgcgaaggccaagacgatcaataagtacctgggc
tcctcctacgaggttctggcctcctacggccatgtccgcgacctgccggccaagaacgga
tcggtcgacccggacgccaatttccagatgatctgggagacagaccccaaggcggcgagc
cggctcaacgatatcgccaaggcgctcaagggcgcggacaaactgatcctcgcaaccgac
cctgatcgcgagggcgaggcgatctcctggcatgttctggaggtgatgaagcagaagcgc
gcgctgaaggatcagaaggtcgagcgcgtcgtcttcaacgccatcaccaagcagtctgtc
accgaggcgatgaacaacccccgccagatcgatggcgcgctggtcgatgcctatatggcc
cgccgcgcgctcgactatctcgtcggcttcacgctatccccggtgctgtggcgcaagctg
ccgggcgcgcgctcggccggccgcgtgcagtcggtggcgctccgcctcgtctgcgaccgc
gagatcgagatcgagaaattcgtcgcccgtgaatactggtcgctggtggcgacgctcgcc
acgccgcgcaacgacaccttcgaggcgcggctcgtcggcgccgacggtaagaaaatccag
cgcctcgacattggcaccggcgcggaagccgaagacttcaagaaggcgctggagacggct
gccttcaccgtctcgctggtggaagcgaagcccgcgcggcgcaatccgcaggcgcccttc
accacttcgacgctgcagcaggaagcaagccgcaagctcggctttgcgccctcgcacacc
atgcggatcgcccagcgcctttatgagggcatcgacatcggcggcgagaccaccggtctc
atcacctatatgcgaaccgacggcgtctcgatcgcgcccgaggccattccggcgctgcgc
aaggtgatcgccgaggagtatggcagcaattacgtgccgagcgcgccgcgccagtacacc
tccaaggcgaaaaacgcgcaggaagcgcacgaagcgatccgcccgaccgacgtctcgcgc
cgcccggccaagctgaaggcgcggctcgataacgatcagtatcgtctctacgaattgatc
tggatgcgcgcgatcgcgagccagatggaatccgctgaactcgagcgcaccaccgtcgac
atcaccgcgaaggctggtgcgcgcacgcttgaactgcgcgcctccggtcaggtcgtgaag
ttcgacggctttcttgcagtctatcaggaaggccgcgatgacgacccggaagacgaagaa
agccgccgcctgcccgcgatgagcgagggcgaggcgctgaagcgcgaaagcctcgcggtg
acgcagcacttcacagagccgccgccgcgctactccgaagcctcgctcgtcaagcgcatg
gaagagctcggcatcggccggccttcgacctacgcgtcgatcctgcaggtgttgaaggat
cgcggctacgtcaagctcgagaagaaacgcctctccgccgaggacaagggccgcgtcgtt
gtcgcgttcctgcagaagttttttgcgcgctacgtcgagttcgatttcaccgccgatctc
gaagagcagctcgacaagatttccaacaacgaagtcgcctggaagaacgtgctctcggac
ttctggcgcgatttcatcggcgccgtcgacgagatcaaggacgtcaaggtcagcgaagtt
ctcgacgtgctcgacgccatgctcggtgagcacatctacgagccgcgcgccgatggcggc
gatccgcgccagtgcccgagttgcggcaccggtcggctcaacctcaaggccggcaagttc
ggcgccttcgtcggctgctcgaactatcccgagtgccgctacactcgtccgctcgctgct
tccagcggcacaagcgaccgtgtgctcggcaaggatccgaagaccaacctcgacgttgcg
gtgaaagccggacggtttggcccctacatccaactcggcgagcccaatgattacgctgag
ggcgagaagcccaagcgcgcgggcattccgaagaacatgtcgcctgccgacgttgagctc
gatctcgcgatcaagctattgtcgctgccgcgcgatgtgggtcctcaccccgaggatggc
gagatcatcaccgcgggcatcggccgcttcggcccgttcgtgcgccacggcaagacctat
gcgagcctcgaagctggcgatgacgtctacacgatcggtctcaatcgcgcggtgacgctg
attgccgagaagatcgccaagggcccgagccgccgcttcggtgccgaccccggcaaggaa
gtcggcgactatccggcgcgcggcggcaagatcatgctcaagaagggccgctacggcgcg
tacgtcacgatcgacggcatcaatgccacgatccccgacgacaaggagcctgaccagatc
acccttgaagaggcgatcgcgctgatcgaggctcgcgccgcaaagggcggcaaggccaag
cgtgcgccgaagaaggccgcggcgaagaaagccgcgcccaagaaaaaggccaccgccaaa
aagaaagccgacagcgagcctgagagcggcgcgaaacctgccaagaaggcagccacacgc
acggcgcccaaggcccgcaccagcaccgcgaaacctgcggccaaaacggctgcgaaggcc
aagcccacggcgaagaagagcgccggaaaagcacgcggataa
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