Afipia carboxidovorans OM4: OCA4_c23050
Help
Entry
OCA4_c23050 CDS
T01967
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OCA4_c23050 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oco03021
]
OCA4_c23050 (rpoA)
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c23050 (rpoA)
Enzymes [BR:
oco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OCA4_c23050 (rpoA)
Transcription machinery [BR:
oco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OCA4_c23050 (rpoA)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OCA4_c23050 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
AEI03429
LinkDB
All DBs
Position
complement(2489793..2490812)
Genome browser
AA seq
339 aa
AA seq
DB search
MTIQKNWQELIRPNKLQVTPGSDPSRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAV
QSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVIKKQGPGVVTAGDIQ
TVGDVVVLNPELQLCTLDDGAEIRMEFTVDTGKGYVAADRNRPEDAPIGLIPVDSLFSPV
RKVSYKVENTREGQILDYDKLTLTIETNGAITPEDALAYSARILQDQLNVFVNFEEPRKE
VVQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRK
SLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatccagaaaaattggcaagaactcatccgtccgaacaagctccaggttacgccg
ggctccgacccgtcccgcttcgccacgctggtggcggagccgcttgagcgcggcttcggc
cagacgctcggcaacgcgctgcgtcgcgtgctgctgtcctcgctgcagggtgcggcggtg
cagtcggtgcacatcgacggcgtgctgcacgagttctcctcgatcgccggtgtgcgcgaa
gacgtcaccgacatcgtgctcaacatcaaggacatctcgatcaagatgcagggcgaaggc
ccgaagcgcatggtgatcaagaagcagggtccgggcgtcgtcacggcaggtgacatccag
accgtcggcgatgtcgtcgtcctcaatcccgagctgcagctctgcacgctcgacgatggc
gccgagatccgcatggagttcaccgtcgacaccggcaaaggctatgtcgcggctgatcgc
aatcgccccgaggatgcgccgatcggcctgatcccggtcgacagcctgttctcgccggtg
cgcaaggtttcctacaaggtcgagaacacccgtgagggccagatcctcgactacgacaag
ctgacgctgacgatcgagaccaacggcgcgatcacgccggaggacgcgctcgcttactcc
gcgcgcatcctgcaggaccagctcaacgtgttcgtgaacttcgaagagccgcgcaaggaa
gtcgttcaggagattatcccggacctcgccttcaacccggccttcctcaagaaggtggac
gagctcgagctgtcggtgcgctccgccaactgcctgaagaacgacaacatcgtctacatc
ggcgacctcgtgcagaagtcggaagcggagatgcttcgcaccccgaacttcggccgcaag
tcgctgaacgagatcaaggaagtgctggcccagatgggtctgcatctcggcatggaagtg
ccgggctggccgccggagaacatcgacgagctcgccaagcgcttcgaggatcattactga
DBGET
integrated database retrieval system
