Afipia carboxidovorans OM4: OCA4_c27040
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Entry
OCA4_c27040 CDS
T01967
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco03420
Nucleotide excision repair
oco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCA4_c27040 (uvrD)
03430 Mismatch repair
OCA4_c27040 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oco03400
]
OCA4_c27040 (uvrD)
Enzymes [BR:
oco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCA4_c27040 (uvrD)
DNA repair and recombination proteins [BR:
oco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCA4_c27040 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
OCA4_c27040 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AEI03822
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All DBs
Position
2876667..2879240
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AA seq
857 aa
AA seq
DB search
MTEPVRRPVADVPAHQPAAGGIAARARAAAAPQYLTALNPEQREAVETLDGPVLVLAGAG
TGKTRVLTSRIAHILSEGRARPSEILSVTFTNKAAREMKQRLGVMLGQTVEGMPWLGTFH
AIAGRILRVHAELAQLKSNFTVLDVDDQIRLLKQLLQAEGIDDKRWPARMLAGLIDGWKN
RGLTPSQVPSGEAAIFGNGKGGKLYTAYQERLKILNAADFGDLLLENIRIFREHPDVLRQ
YQHRFRYILVDEYQDTNVAQYLWLRLLAQAPSPLTSPRLRGEHSRPSADVLEEGRRGEAT
ALARSASGEGQNLDISLEDSAPHPNPLPVNGERGQTPKNICCVGDDDQSIYGWRGAEVDN
ILRFDHDFPGAKVVRLERNYRSTGHILATASHLIAHNEGRLGKTLRTEDVDGEKVSVTGA
WDSEEEARSIGEEIEQFQRAGEKLNEIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFY
ERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQLLHDHARKRRVPLTEAARA
IIETDELKPKPRGSLRDLLASFDRWSAQRDAIPHTELAEIVLDESGYTEMWQKDRSADAA
GRLENLKELVRSMEEFENLHGFLEHISLVMDREGGGDEDAVSVMTLHSAKGLEFDNVFLP
GWEEGLFPHQRALDEQGRAGLEEERRLAHVGITRARRRAKIYFATNRRIHGSWSTTIPSR
FLDELPAEHVEILESKGGAGWGGAGGYGASRFDNIESFGSSYSTPGWQRAQSNRGRGGGF
NESGARYGGGGRRKPLTIEGELIAKSTGTESEFAPGERVFHQKFGYGRIARVDGNKLTIA
FDKAGEKKVIDSFVTRA
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacctgttcgccgacccgttgccgatgtgcctgcccaccagcctgccgctggc
ggcattgccgcgcgcgcccgtgcggcggcggctccccaatatctcacagcgctgaacccc
gagcagcgcgaggcggtcgagacgctcgatggccccgtgctggtgctcgccggcgccggc
accggcaagacccgcgttctcacctcgcgcatcgcccacatcctgagcgagggccgcgcc
cggccgtccgaaatcctgtcagtgacgtttaccaacaaggccgcgcgcgagatgaagcag
cggctcggcgtcatgctcggccagacggtggaaggcatgccgtggctcggcaccttccac
gccatcgccgggcgcatcctgcgcgtgcatgccgaactcgcgcagttgaagtcgaacttc
accgtgctcgacgtcgacgaccagatccgtcttctcaagcagcttctgcaggccgagggc
atcgacgacaagcgctggcccgcgcgcatgctcgccggcctgatcgacggctggaagaac
cgcggcctcacgccctcgcaggtgccctccggcgaagccgcgatcttcggcaacggcaaa
ggcggcaagctctataccgcctatcaggagcggctgaagattctcaacgccgccgatttc
ggcgatctccttctggagaacatccgcatcttccgcgagcaccccgacgtgctgcggcag
tatcagcatcgcttccgctatattctggtcgacgaatatcaggacaccaacgtcgcgcag
tatctctggctgcgactgctggcgcaggcgccgtcgcctctcacctcgccccgcttgcgg
ggagagcatagtcggccttcggccgacgtccttgaggaaggacgccgtggcgaagccacg
gctttggcacgaagtgcatccggtgaggggcaaaacctcgacatctcgcttgaagattcc
gcccctcaccccaaccctctccccgtaaacggggagagggggcagacgcccaaaaacatc
tgctgcgtcggcgacgacgaccagtcgatctatggctggcgcggcgcggaggtagacaac
atcctgcgcttcgatcacgactttcccggcgcgaaagtcgtgcggctcgagcgtaactat
cgctccaccggccacatcctcgccaccgcctcgcacctcatcgcccacaacgaaggccgc
ctcggcaagacgctgcgcaccgaggatgtcgacggcgaaaaggtgagcgtcaccggcgcc
tgggattcggaagaagaagcccgctcgatcggcgaggagatcgaacagtttcagcgcgcg
ggtgagaagctcaacgagatcgccattctggtgcgcgcctcgtttcagatgcgcgagttt
gaagaccgtttcgtcacgctcggcctgccctatcgcgtgatcggcggtccgcgcttctac
gaacgcgccgaaatccgcgatgcgctggcctatctgcgcgtgatcaattcgcccgccgac
gatcttgcgttcgagcgcatcgtcaacgtgccgaagcgcgggctcggcgacgccacggtg
cagcttctgcacgaccacgcccgcaagcgccgcgtgccgctgacggaagccgcgcgcgcc
attatcgagactgacgagttaaagcccaagccgcgcggcagcctgcgcgatctgcttgcc
agcttcgaccgctggagcgcgcagcgcgacgccattccgcacaccgagcttgccgaaatc
gtgctcgacgagagcggctataccgagatgtggcagaaggaccgctccgccgacgccgct
ggccggctggaaaacctgaaagagctcgtgcgctcgatggaagagttcgagaacctgcac
ggcttcctcgaacacatctcgctggtgatggaccgcgaaggcggcggcgacgaagatgcc
gtgtcggtgatgacgctgcattcggcgaagggcctcgaattcgacaacgtgttcctgccg
ggctgggaagaagggctgtttccgcatcagcgcgcgctcgacgaacagggccgcgcaggg
ctcgaggaagaacgccgcctcgcccatgtcggcatcacccgcgcacgccggcgggcgaaa
atctatttcgccaccaaccgccgcattcacggctcatggtcgacgaccattccctcgcgt
tttcttgacgaactgccggccgagcatgtcgagattctggaatccaaaggcggtgcggga
tggggcggcgcggggggttatggcgcctcgcgcttcgacaacatcgaatcgttcggctcg
agctattcgacgcccggctggcagcgcgcgcaatcgaaccgtggccgcggcggtgggttc
aacgaaagcggcgcgcgatatggtggcggcgggcgccgcaagccgctcaccatcgaaggc
gaactgatcgcgaaatcgaccggcaccgaatccgaattcgcgcccggcgagcgcgtcttc
caccagaagttcggctacggccgcatcgcacgcgtcgacggcaacaaactcaccatcgcc
ttcgacaaggctggtgagaaaaaagtgatcgacagcttcgtgacgcgggcctga
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