Afipia carboxidovorans OM4: OCA4_c33130
Help
Entry
OCA4_c33130 CDS
T01967
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oco03016
]
OCA4_c33130
Enzymes [BR:
oco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
OCA4_c33130
Transfer RNA biogenesis [BR:
oco03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
OCA4_c33130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AEI04409
LinkDB
All DBs
Position
complement(3497323..3497901)
Genome browser
AA seq
192 aa
AA seq
DB search
MPRLFTGLEIPPDISQSLSMLRGGLPGGRWVDPENYHVTLRFIGDIDDDVAREIAGSLER
IDRQPFEVTLQGLSSFGGKKPRAVVACVAPTRPLMELQAEHERLMRRFGLEPEGRKFIPH
VTLARLRDASSRDVADYLSVRGYFPAKRFVASRFVLFSSRASVGGGPYVVEDSYGLSPVE
PDRGAQRRYFIS
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtttattcactggacttgagatcccgcccgacatttcccaatcactgtcgatg
ctgcgtggcgggcttcccggcggccgctgggtcgatccggaaaattatcacgtcacgctg
cgtttcatcggcgacatcgacgacgatgtcgcgcgcgagatcgcgggctcgctcgagcgc
atcgatcgccagcccttcgaggtgacgctgcaggggctgtcgagcttcggcggcaagaag
ccgcgcgcggtggtggcctgcgttgcgccgacccggccgctgatggagttgcaggccgag
catgagcggctgatgcgccgcttcgggcttgagccggagggccgcaagttcattccgcat
gtcacgctggcgcgtctgcgcgatgcgtcgagtcgtgatgtcgccgactacctttcggtg
cgtgggtacttcccggcgaagcggttcgtcgcctcgcgtttcgtgctgttctcctcgcgc
gcgtctgtcggtggcgggccctacgtggtcgaggattcctacgggctgtcgccggttgaa
ccggatcgcggcgcgcaaaggcgatatttcatctcataa
DBGET
integrated database retrieval system
