Afipia carboxidovorans OM4: OCA4_pHCG3B01060
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Entry
OCA4_pHCG3B01060 CDS
T01967
Symbol
traA
Name
(GenBank) Ti-type conjugative transfer relaxase TraA
Organism
oco
Afipia carboxidovorans OM4
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MobA_MobL
AAA_30
Bep_C_terminal
AAA_19
Viral_helicase1
AAA_11
UvrD_C_2
AAA_22
TraI_hel_assoc_N
SH3_13
AAA_25
ATP_bind_1
DUF4350
ABC_tran
PIF1
Motif
Other DBs
NCBI-ProteinID:
AEI04551
LinkDB
All DBs
Position
pHCG3B:110747..114058
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AA seq
1103 aa
AA seq
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MAITHFTPQIISRADGRSAVLAAAYRHCAKMTYEAEARVVDYTGKRNMVHDEFVLPPDAP
QWACAMMATRSAAEVSAAFWNKLEAFEKRSDAQLSKEYIIALPIELTTAQNVALMRQFVA
EHILSKGQVADWVYHDDPGNPHVHLMTSLRPLTEDGFGPKRVHVVGEDGATLRGRTGKIV
YKLWAGDKNDFLSVRQGWIDLQNHHLALAGLDVRVDGRSYAERGIDVVPTTHIGVAAKAI
ERRARRQGRGPDLDRLRLFEDQRQVSAERIMRRPEIVLDIVSREKSVFDERDVAKVLHRY
VDDAGTFAMLLARILQSPDAIRLEREGIDFANGARRPARYTTRELIRVEADMAKRAVSLS
GSSSFGVSDKIRNAVLSRHAMISGEQRSAIEHITAAGSAAAVVGRAGAGKTTMMRAAREV
WEAAGYRVVGGTLAGKAAEGLEKEAGIASRTLASWELAWSKGRSVLDNRTVFVLDEAGMV
ASRQMATFVEAVSRAGAKLVLVGDPEQLQPIEAGAAFRALVDRIGYAELETIYRQKAQWM
RDASLDLARGRVGKALAAYRHYGRVMGSELKAQAVTSLIDDWSRDYDPKKSTLILAHLRR
DVRALNEMARASLVSRGLVDAGHAFRTEDGERRFAAGDQIVFLRNEGSLGVKNGMIGHVV
EAAQGRFTAEIGEGVHRRRVEVDQRFYRNVDHGYATTIHKAQGATVDRVKVLASLSLDKH
LTYVALTRHREDVALYYGRRSFGKAGGLVPLLSQRNAKETTLDYERGGLYRDALRFAANR
GLHVMRAARTLISDRLDWARRQRQRFDELAARLRAVGAHLGLLDRHHTAPLSRKKEIAPM
VPGVTTWPKSIAESVEDKIVADPACRKQWQDMSARFALVFSNPEVAFKAMNFDAVLHNPA
MRKATLNRLAKEPESFGDLRGAKGILTGQAAARERHEAETNVAALSRDIERYARLRNEAT
RKHDAEERALRLRVTIDVPALSPAATLVLERIRDAIDRNDIPNALAFALSDKMVSAEIEG
FNKAVAERFGEGAFLHNRAKEPKGAAFDVAAARLRENEKPALAAAWPLMRAGQHLAAHQK
QSAEAAKRVESQRQVQSRGMAMK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
ttggccatcacgcatttcacgccgcaaatcatcagccgcgcagatggccgcagtgcggtg
ctggcagccgcgtatcgccattgcgcgaaaatgacctatgaggccgaagctcgcgttgtc
gactacacgggcaagcgcaacatggtgcatgacgagtttgttctgccgccggatgccccg
caatgggcgtgtgcgatgatggctacgcgctccgctgccgaggtttccgcggcgttctgg
aacaagctcgaagcgttcgaaaagcgatcagacgcgcagctctccaaggaatacatcatc
gcgctgccgatcgagctgactaccgcgcagaacgtggcgctcatgcgccagttcgttgcc
gagcacattctatccaagggacaggttgcggactgggtctatcatgatgatccgggcaat
ccccatgtgcatctgatgacgagtctgcgcccactcacggaagatggatttgggccgaag
cgggtgcacgtcgtgggcgaggacggtgcgacgctgcgcggccgaaccggcaagatcgtt
tataagctctgggccggcgacaagaacgactttctgtcggtccggcagggatggattgac
cttcagaaccatcatcttgcgctggccggtctcgatgtgcgcgtggatggtcgatcctat
gccgaacgcggcatcgacgttgttccgaccacccatatcggcgttgccgcgaaagcgatt
gagcgccgcgccaggcgtcaggggcgggggccagacctcgatcggctacgcctgttcgag
gaccaacggcaggtctcggctgagcggattatgcgccgcccggagatcgtccttgacatc
gtttcgcgcgagaagagcgtatttgacgagcgagatgttgcaaaggttttgcatcgctat
gtcgacgacgccggcacgttcgcgatgctccttgcgcgcatcctgcaaagcccggatgcg
atccgcctcgagcgtgaagggatcgacttcgcgaacggcgcgagacggccggcgcgctac
accacgcgcgagctgatccgcgtcgaggcggacatggcaaaacgtgcagtgagcctgtcg
ggatcgagcagcttcggtgtgagtgacaagatccgcaacgcggtcttgagccgccatgcg
atgatctcgggtgagcaacggtcggcaatcgagcatatcacggcagcggggagcgcggcc
gcggtggttgggcgtgctggcgccggtaagacgaccatgatgcgcgccgcccgcgaagta
tgggaagccgccggctatcgtgtcgtgggaggcacgctggcgggcaaggccgcggagggc
ctcgagaaagaagcggggatcgcgtcacgcaccctggcgtcatgggagctcgcatggagc
aagggccgatcggtcctcgataaccggacggtcttcgtgctcgacgaggcgggcatggtt
gcctcgcgccaaatggcgactttcgtcgaagccgtgtcgcgtgcgggcgccaagctggtc
ctggtcggcgaccctgagcagctccaaccgattgaagctggcgcggcattccgtgccctg
gtcgaccgtatcggttacgcggagctcgagacgatctaccgccaaaaggcgcaatggatg
cgcgacgcctcgctcgatctcgcgcgtggccgggtcggtaaggcattggcggcgtaccgt
cattacggacgcgtcatgggctccgagcttaaggcccaggccgtgacttcgttgatcgat
gattggagccgagactacgatccgaagaagtcgaccttgatcctggcgcatctgcgtcgt
gacgtgcgcgcgctcaacgagatggcccgcgccagcctcgtgtcacgcggcctcgttgac
gctggccacgcgtttcgtaccgaggacggagagcgccggttcgcggccggcgatcagatc
gtgtttctccgcaatgaggggtctctcggcgtcaagaacgggatgatcgggcacgtagtc
gaggcggcgcaaggccggtttacggccgagatcggggagggtgtacatcgcaggcgagtc
gaggtcgaccagcgcttttatcgcaatgttgaccatggctacgcgaccacgattcacaag
gctcagggcgcgactgtcgaccgtgtgaaggtgctcgcgagcctctcgcttgacaagcac
ctgacctacgtggcgctgacccgccaccgcgaggatgtcgcgctgtactacggccgccga
tccttcgggaaagctgggggtctggtcccgctgctgtcacagcgcaacgccaaggaaacg
acgctcgactacgagcgcggcggcctttatcgagatgcgctgcgctttgccgcaaatcgc
ggtctccacgtcatgcgcgccgcgcgcaccctcatctcagaccgcctggactgggcacgt
cgacagaggcagcggtttgatgaactggcagcgcgcctgcgcgccgttggcgcccatctt
ggtcttctcgaccgccatcatactgcacccctctcacggaagaaggagatcgctcccatg
gtgcccggcgttaccacatggccgaaatccatcgccgagtcggtcgaggacaagatcgtc
gccgatccggcgtgcaggaagcagtggcaggacatgtccgcccgcttcgcgctcgtgttt
tcaaatccggaggtggccttcaaggccatgaacttcgacgcggtgttgcacaatcctgca
atgcgaaaggcaacgctcaatcgcctggccaaagagccggagagcttcggggacctgcga
ggtgcgaagggtatccttaccgggcaagccgccgctcgggagcgccacgaggccgagacc
aatgtcgccgcgctgagccgcgacatcgagcggtatgcgcgattgcgtaatgaggccaca
cgcaaacacgatgctgaggagcgcgcgctaaggctgcgtgtcaccattgatgtgccggcc
ctatcgccggccgcgacgctggtgttggagcgtattcgcgacgccatcgaccgcaacgac
attccgaatgcgttggccttcgcactctctgacaagatggtcagtgcggagatcgaaggg
ttcaacaaagctgtggcagagcgcttcggcgaaggagcgtttctgcacaatcgcgcgaaa
gagcctaagggcgccgccttcgatgtagcggctgccagactgcgagaaaatgaaaagcct
gcgctcgcggcggcatggcccttgatgcgtgcagggcagcatctcgccgctcatcagaag
caatcggcagaggcggcgaagcgagtggaaagccagcgccaggtccagagccgtgggatg
gccatgaaatga
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