Afipia carboxidovorans OM4: OCA4_pOC167B00130
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Entry
OCA4_pOC167B00130 CDS
T01967
Name
(GenBank) transcriptional regulator, LuxR family
KO
K18098
LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
Organism
oco
Afipia carboxidovorans OM4
Pathway
oco02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OCA4_pOC167B00130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oco03000
]
OCA4_pOC167B00130
Transcription factors [BR:
oco03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
OCA4_pOC167B00130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autoind_bind
GerE
Sigma70_r4_2
Sigma70_r4
HTH_23
HTH_10
HTH_11
DUF134
Motif
Other DBs
NCBI-ProteinID:
AEI04583
LinkDB
All DBs
Position
pOC167B:complement(11745..12479)
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AA seq
244 aa
AA seq
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MTDLFWSTWEIISLIEQAVDEGALKNCLIDIAKSYGFASVFGGIVPPGGMRNSKAEIQAR
AVVQYFPDGWAARYLDQNYLPRDPIVGRLQKDRNAFSWSESYKSCPEPDNVRAVGGEAAD
FGLVEGFVIPITTLDQRIAALSFGGARDDLSNRDRSALIFLANFAIGHWLYLRRPRPTCN
KTLSPRELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVNKPHAIAIAMRL
KILG
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgacagacttattttggagcacttgggaaattatctcgctgatagagcaagcagtcgat
gagggcgctcttaaaaattgtcttatagacatcgccaaaagttacggatttgcatcggta
tttggcggaatcgtaccaccgggtggcatgcgaaattcaaaggccgaaattcaagctcgc
gcggtcgtgcaatatttccctgatggctgggcagccagatacctcgatcaaaactatctt
ccgcgcgatccgattgttggtcgtcttcaaaaagatcgaaatgcattttcctggtcggaa
agttataaatcctgtcccgaaccagacaacgtgcgggctgtcggaggtgaggctgccgac
tttgggttggttgaaggtttcgtgatccccatcacgacgctagaccagcggattgcggca
ttatcattcggcggagcaagggacgacctcagcaatcgtgaccgatcagcccttattttt
ctcgcaaatttcgccatcggtcattggttgtatttgcgccgcccgagaccaacgtgcaat
aaaacgctctcgccccgggagcttgactgtcttctttgggccggggaaggaaaaacagat
tgggaaatatccgtcattctcggcatttctcggtcaacagtaacaaagcacatcacttca
gcacgcgagaaacttaacgccgtcaataagccccacgcaattgcaatcgcgatgcgtctg
aagattttgggctaa
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