Ornithinimicrobium cryptoxanthini: NF557_02005
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Entry
NF557_02005 CDS
T08994
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NF557_02005 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_02005 (ligD)
Enzymes [BR:
ocp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NF557_02005 (ligD)
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NF557_02005 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
USQ76729
LinkDB
All DBs
Position
complement(430097..431047)
Genome browser
AA seq
316 aa
AA seq
DB search
MRPMLATPGRPTGHGPGIPEGDGWAHELKWDGIRLLAHVQDGVLRLTTRSERDVTVAFPE
LEGLADLGHDLLLDGEAVTFVDGAPSFSQLVERVHTTSAAKGRLLASTRPTTYVIFDLVG
VDGLDLAPLPWSARREALEQIVPERARWQVSPQYADGTGLWRATAEQGLEGIVSKRVSST
YQPGVRSQDWLKFPHRGTESFVVGGWRPETGRAKLGSLLVGVPTAEGLSYRGRVGSGLAG
RAGSRLAELIAKVPEGECPFADEVPRVDRAGATWLAPELVVDIAALGTTSAGRLRQPAFK
SWRGDLTPDDLVGEDR
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgagacccatgctcgccactccgggccggcccacagggcacggccccgggattcccgag
ggtgacggctgggcgcacgagctcaagtgggacggcatccgactgctggcccacgtccaa
gatggcgtgctgcgactgaccacccgcagcgagcgcgatgtgacggtggccttccctgag
ctggagggtctggccgacctcggtcatgacctgctcctcgacggggaggccgtgaccttc
gtcgacggcgccccctccttcagccagctggtcgaacgggtccacaccacctccgcagcc
aaggggcgactgctggcatccacccgccccacgacatacgtgatctttgacctggtcggc
gtcgacggacttgatctcgcaccgctcccgtggtcggctcgcagggaggccctggagcag
atcgtgccggagcgcgcccggtggcaggtctcaccgcagtatgccgatgggacgggcctg
tggcgtgccaccgctgagcagggactcgagggcatcgtcagcaagcgggtgtccagcacc
tatcagcccggggtgcgcagtcaggactggctgaagttcccgcaccgcggcaccgagagc
ttcgtcgtgggcgggtggcgtccggagaccggccgggccaagttggggtcgctcctggtc
ggagtgccaacggcagaaggtttgagctatcgcggtcgcgtcggcagcgggctggcgggt
cgggcgggcagtcgtctggctgagctgatcgcgaaggtgcccgagggtgagtgccccttc
gccgacgaggtcccgcgggtggaccgggccggcgcgacgtggctcgccccggagctggtc
gtcgacatcgcggcgctgggcaccacctcggcaggtcggttgcgccagcccgccttcaag
agctggcgcggtgacctgacgccggatgacctggtcggagaggatcgctga
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