Ornithinimicrobium cryptoxanthini: NF557_03550
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Entry
NF557_03550 CDS
T08994
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NF557_03550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocp03021
]
NF557_03550
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_03550
Enzymes [BR:
ocp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NF557_03550
Transcription machinery [BR:
ocp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NF557_03550
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NF557_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
USQ77006
LinkDB
All DBs
Position
758722..762639
Genome browser
AA seq
1305 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRRWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAGVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDVDARHKDLPSLEAEIDTERKALENRRDADVETRHKKLEAD
IAELEAEGAKSDAKRKVRDGAEREMNQIRRRADQQVERLDQVWDRFKNLKVQDLEGDEIL
YREMRDRFGQYFEGGMGAAALQKRLQTFDLEAEVVLLREIIATGKGQKKTRAIKRLKVVT
SFLTTVNNPDGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERGR
SVVWDVLEEVITDHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVIGLFHLTSEAFSDNGEQA
ETDEETPVSRSFASIAEAQMAFDAGQIEVGTPIRLRVTQTAAPLGHELPEGAEVTEDGIV
SEFLVDTTLGRAIFNISLPPNYPFVNDVVDKKRLSAIVNDLAERYTKVQVAASLDSLKDT
GFYWATRSGTTVAISDVMTPVRKGEILDIYDAKAAKVQTQYERGLITDDERRQELIEIWT
QATNEVAKELETTMPKDNTIYRMVTSGARGNWFQLRQIAGMRGLMANPKGEIIPRPIKSN
FREGLSVLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTDRGFLM
PIGVETPSGDLREHDDVETSVYARTLAQNVEHDGQVLAEAGIDLGDVVIDALVAAGVKDV
KVRSVLTCESLVGTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGV
AGDDITQGLPRVVELFEARTPKAVAPIAEASGRVQIEDTDKSRRILLVPDDGSEEHAYPV
TKRARLLIADGEHVEVGRQLVQGAIDPKQVLRILGPRAAQQHLVDEVQAVYRQQGVSIHD
KHIEVIVRQMLRRITVIEAGDARLLPGELVERGRFETENRRVVSESGKPASGRPELMGIT
KASLATDSWLSAASFQETTRVLTEAAMQAKSDPLLGLKENVILGKLIPAGTGLPRYRNLT
VEPTEEAKAAAYAVPDYDQFEYPAFGPGSGEAVRLDDLSVGDERY
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagttgcggattggcctggccacggcggaggacatc
cgtcgctggagccacggcgaagtgaaaaagcctgagaccatcaactaccgcaccctgaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaaatacaagcgggtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgcgccggcgtgcgccgagagcggatgggtcacatcgagctcgctgctccc
gtgacgcacatctggtacttcaagggtgttccgagccgactgggctacctgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgcggcctacatgatcacctccgtcgac
gtggacgcccggcacaaggacctgccctcgctcgaggctgagatcgacaccgagcgcaag
gccctggagaaccgccgggacgccgacgtcgagacgcgtcacaagaagctcgaggccgac
atcgccgagctcgaggccgagggtgccaagagcgacgccaagcgcaaggtgcgcgacggt
gccgagcgcgagatgaaccagatccgtcgtcgggccgaccagcaggtcgagcgtctcgac
caggtctgggaccgcttcaagaacctcaaggtccaggacctggagggtgacgagatcctc
taccgcgagatgcgcgaccggttcggtcagtacttcgagggcggcatgggggcggcggcg
ctgcagaagcgtctgcagaccttcgacctcgaggccgaggtcgtgctgctgcgcgagatc
atcgcgaccggcaagggccagaagaagacccgcgccatcaagcggctcaaggtcgttacc
tccttcctgaccactgtcaacaaccccgacggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgctttgcgacctccgacctc
aacgacctctatcgccgcgtgatcaaccggaacaaccggctcaagcgtctgctcgacctg
ggcgctccggagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacagc
ctgttcgacaacggccgtcgtggtcgcgccgtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggtcggttccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgtggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctggaccacgcacagaacatcaagtccgccaagcggatggtcgagcgcggccgc
tccgtggtgtgggacgtgctcgaggaggtcatcaccgaccaccccgtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgccttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctcggcagaggcccaggccgaggcccggatcctgatgctc
tcgagcaacaacatccttaagccggccgacggtcgccccgtgaccatgccgacccaggac
atggtcatcgggctgttccacctgacgtccgaggcgttctcggacaacggtgagcaggcc
gagaccgacgaggagaccccggtcagccggtcgttcgcctcgattgctgaggcgcagatg
gccttcgacgccggtcagatcgaggtcggcacgccgatccggctgcgggtcacccagacc
gcggcaccgctggggcacgagctgcccgagggcgccgaggtcaccgaggacggcatcgtc
tccgagttcctggtcgacaccacgctgggccgggcgatcttcaacatctccctgccgccg
aactacccgttcgtcaacgacgtggtcgacaagaagaggctgtccgcgatcgtcaacgac
ctcgccgagcgctacaccaaggtgcaggtcgcggcgtcactggactcgctgaaggacacc
ggcttctactgggcgacccgctcgggcacgaccgtggccatctccgatgtgatgaccccg
gtgcgcaagggcgagatcctggacatctatgacgccaaggcggccaaggtccagacgcag
tatgagcgtggtctgatcaccgacgacgagcgccgtcaggagctcatcgagatctggacc
caggcgaccaacgaggtggccaaggagctcgagaccacgatgcccaaggacaacaccatc
tatcggatggtgacctcgggtgctcgaggcaactggttccagctgcgtcagatcgccggc
atgcgtggcctgatggccaaccccaagggtgagatcatcccgcgtccgatcaagtccaac
ttccgtgagggcctgtcggtgctggagttcttcatctccacgcacggtgcccgcaaggga
ctggccgacaccgcgctgcgcaccgccgactcgggctacctgacccgtcgtctggtggac
gtcagccaggacgtgatcatccgtgaggacgactgtggcaccgaccgcggcttcctcatg
ccgatcggcgtggagaccccgagcggggacctgcgtgagcacgatgacgtggagacctcg
gtctatgcccgcacgctcgcacagaacgtcgagcacgacggtcaggtcctggctgaggcc
ggcatcgacctcggtgacgtggtcatcgacgcgctggtcgcggctggtgtcaaggacgtc
aaggtccgctcggtgctcacgtgtgagtcgctggtcggcacctgtgccaagtgctacggc
cgctcgttggccaccggcaagctggtcgacatcggtgaggccgtcggcatcatcgcggcc
cagtcgatcggtgagccgggcacccagctgacgatgcgcaccttccacaccggtggtgtg
gccggtgacgacatcacgcagggtctgccgcgagtcgtcgagctgttcgaggcccgcacg
cccaaggcggtcgccccgatcgccgaggcctccggtcgcgtccagatcgaggacactgac
aagtcccgtcggatcctgctggtcccggacgacggctccgaggagcacgcctacccggtc
accaagcgggcccgcctgctgatcgccgacggcgagcacgtcgaggtcggacgccagctg
gtccagggtgcgatcgaccccaagcaggtgctgcgcatcctcggcccgcgtgctgctcag
cagcacctggtcgacgaggtgcaggcggtctatcgccagcagggtgtgtcgatccacgac
aagcacatcgaggtcatcgtgcggcagatgctgcgtcggatcacggtcatcgaggccggc
gacgcccgtctgctgccgggtgagctggtcgagcgcggccggttcgagaccgagaaccgt
cgcgtcgtgtccgagtccggcaagccggcctcgggtcgtccggagctgatgggcatcacg
aaggcctcgctggccaccgactcgtggctgtccgccgcctccttccaggagaccacccgg
gtgctgacggaggcggccatgcaggccaagtccgacccgctgctggggctgaaggagaac
gtcatcctcggcaagctgatcccggccggcaccggcctgccgcgctaccgcaacctcacc
gtggagcccacggaggaggccaaggcagccgcctacgccgtcccggactacgaccagttc
gagtacccggccttcggtccgggttcgggcgaggccgtccgcctggacgacctgtccgtg
ggtgacgagcgctactga
DBGET
integrated database retrieval system
