Ornithinimicrobium cryptoxanthini: NF557_05065
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Entry
NF557_05065 CDS
T08994
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF557_05065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocp03019
]
NF557_05065
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_05065
Enzymes [BR:
ocp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF557_05065
Messenger RNA biogenesis [BR:
ocp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF557_05065
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NF557_05065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
HEM4
Motif
Other DBs
NCBI-ProteinID:
USQ77287
UniProt:
A0ABY4YKH7
LinkDB
All DBs
Position
1071305..1073410
Genome browser
AA seq
701 aa
AA seq
DB search
MSEQAHEALRRLVGRDDAEFREGQLDAIQALVDRRERVLVVQRTGWGKSAVYFVATALRR
AAGAGPTVIVSPLLALMRDQIEAARRAGITAVSMNSANAEEWGSVRQQLTDDSVDVLLVS
PERLNNPRFREEQLPDLAARCGLLVVDEAHCISDWGHDFRPDYRRIRTLLAGLPADTPVL
ATTATANERVVHDVVEQLSVGGDGSVRAVSTIRGPLARASLRLGVLEMETPERRIAWLLA
HLGDLPGSGIVYALTVSAAEDLAATLSSAGHQVAAYTGRTDPADRLELERRLRDNEVKAL
VATSALGMGFDKPDLGFVVHLGAPSSPVAYYQQVGRAGRATDNADVLLLPGVEDRNIWAY
FASAAMPRQEQADAVLTALAGSGKPLSTAALETLVDVRRTRLELLLKVLDVEGAVEKVQG
GWTGTGQPWTYDAERYTRVAEAREREQQLMLDYQRTDGCRMAFLQRCLDDPTAADCGRCD
RCAEAWYPTDIPAEAVDRAMGQLSRVGVPVEPRAQWPTGMDRLGVPVRGKIPSGEAMERG
RVLARVSDLGWGQRVRELVQGPDAPVPDQIVNAVTKALADWDWAQRPVAIVSVPSRSHPE
LVGSLVRRISELGRLPYLGELSAPNGGPTGESGGNSAFRLAAVWEQLTVGPELAQQLARL
QGPVLLVDDLIDSRWTMTVAARALRLAGAEAVLPLALAQAG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaggcacacgaggcactccggcgactggtcggccgggacgacgcggagttc
cgggagggacagctcgacgcgatccaggcgctggtggaccggcgcgagcgggtcctcgtc
gtgcagcgcaccggctggggcaagtcggccgtctatttcgtggccaccgcactgcgccgg
gccgcgggcgcgggaccgaccgtgatcgtctcgccgctgctggcgctgatgcgcgaccag
atcgaggcggcccggcgggcggggatcactgccgtgtcgatgaactccgccaacgccgag
gagtggggctcggtgcgccagcagctgaccgacgacagcgtcgacgtcctgctggtgagc
cccgaacgcctcaacaacccgcgcttccgagaggagcagctgcccgacctcgcggcccgt
tgcgggctgctcgtggtcgacgaggcgcactgcatcagcgactggggacacgacttccgg
ccggactaccggcggatccgcaccctgttggcggggctgccggcggacaccccggtgctg
gcgacgacggccaccgccaacgagcgggtggtgcacgacgtcgtggagcagctctccgtc
ggcggcgacgggagcgtccgtgcggtcagcacgatccgcgggccgctggcccgggcctcg
ctgcgtctcggcgtcctggagatggagaccccggagcgtcgcatcgcctggctgctggcc
cacctgggtgacctgcccggcagcggcatcgtctatgccctgaccgtgtccgccgccgag
gacctggccgcgaccctgagctcggcgggacaccaggtcgctgcctacaccgggcgcacc
gaccccgcagaccggttggagctcgagcgacgactgcgggacaacgaggtcaaggcgctg
gtggccaccagcgccctcggcatggggttcgacaagcccgacctcggctttgtcgtgcac
ctgggggcgccgagctcaccggtggcctactaccagcaggtcggccgggccggtcgcgcc
acggacaacgcggatgtgctgctgctgccgggggtcgaggaccgcaacatctgggcctac
ttcgcctcggcagcgatgccgcgccaggagcaggccgacgcggtgctgaccgcgctcgcg
gggtcgggcaagccactgtcgaccgccgcgctggagactctcgtcgacgtgcgtcgcacg
aggctggagctgctgctgaaggtgctcgatgtcgagggcgcggtcgagaaggtccagggc
ggctggaccggcaccgggcagccgtggacctacgacgccgagcgctacacccgagtggcg
gaggcacgcgagcgggagcagcagctgatgctcgactaccagcggaccgacgggtgccgc
atggccttcctgcagcggtgcctggacgacccgaccgctgcggactgcggccgctgcgac
cggtgtgcggaagcgtggtaccccaccgatatcccggccgaggccgtcgaccgggccatg
ggccagctgtcccgggtgggcgtgccggtcgagccacgggcccagtggcccaccggcatg
gaccggctcggggtgccggtgcgtggcaagatcccgtcgggcgaggcgatggagcggggc
cgggtcctggcgcgggtctccgacctcggctggggtcagcgggtccgcgagctcgtgcag
ggaccggacgcgccggtgcccgaccagatcgtcaacgcggtgaccaaggcgctggccgac
tgggactgggcccagcgaccggtggcgatcgtctcggtgccctcgcgcagccaccccgag
ctggtgggctccctggtgcggcgcatcagcgagctggggcgactgccctatctgggggag
ctgagcgcccccaacggcgggccgactggggagtccgggggcaacagcgccttccggctg
gccgcggtctgggagcagctcactgtgggacccgagctggcccagcagctcgcccgtctg
cagggaccggtgctgctggtcgatgacctgatcgactcgcggtggacgatgacggtcgcc
gcgcgggcgctccggctcgcgggtgccgaggcggtcctcccgctggccctggcccaggcc
ggctga
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