Ornithinimicrobium cryptoxanthini: NF557_05820
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Entry
NF557_05820 CDS
T08994
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocp03019
]
NF557_05820 (hrpA)
Enzymes [BR:
ocp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NF557_05820 (hrpA)
Messenger RNA biogenesis [BR:
ocp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NF557_05820 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
nSTAND_NTPase5
T2SSE
nSTAND3
NACHT
ABC_tran
SLFN-g3_helicase
AAA_30
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
USQ77432
UniProt:
A0ABY4YLC4
LinkDB
All DBs
Position
1243696..1247646
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AA seq
1316 aa
AA seq
DB search
MPTEHANPPRRARDRRRATNRRPRQEPSPQQRTKRVEARRAMLPPKISYPPELPVAERRD
DIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGIEGAIGHTQPRRIAARSVAERISE
ELDVELGSTVGYQVRFTDKSTRDTLVKVMTDGILLSELQRDRDLRRYDTLIIDEAHERSL
NIDFILGYLKQLLPRRPDLKVIITSATIDVQRFAEHFAEPDGTPAPIVEVSGRSFPVEIR
FRPLTRPGPPAKDGTARDVEIDQVTGVCEAVEELWTEDPGGGPADILVFCSGEREIRDVA
DALDGMNLPGTEVLPLYGRLSAAEQHRVFSRHSGRRIVVSTNVAETSLTVPGIRYVIDTG
TARISRYSQRLKVQRLPIEAISQASANQRSGRCGRLADGIAVRLYSQEDFESRPEFTEPE
ILRTNLASVILQMTNLGLGDVARFPFLEPPDSRQIADGVRLLEELQAIDTDAPVHVPRRR
LTAYGRAIVALPVDPRLARMVIEAERNGALREMSVIVAALSMQDPRERPADAQAQADQSH
ARFKDEVSDFITLLNLWSYLKEQQKALSGSAFRRMCKREYLHYLRVREWQDLHTQLKQAT
KSLGLQPNSNEANADQVHQSLLAGLLSHVGLYDRDKREYVGARGARFVIQPGSVLHRKNP
DWLMTAELVETTRLWARVNAPTDPAWVERAAAHLVKRSYSEPRWSRSRASAIATERVTLY
GVPLVADRTVPYGRIDPEVARDLFIRHGLVEGDWDTRHDFFHANRRLIRDVSELEARARR
RDILVDDETLVEFYDARLPAEAVSGAHFDTWWKQARRADSTLLTFTEDLLVSGDASLVSD
RDYPGTWRQGELEFAVTYQFEPGSGSDGVTVHVPIEVLNRVRPDGFDWQVPGLREELATA
LVKSLPKEIRRNFVPAPDHARAALAAIGEPRDEQEALVEALADELTARRIVPVAPSDFDV
DRVPDHLKVTFAVERSVAPGSRRGRSRARVELLGEGKDLAALQAELAPAVRTTMSRAAAS
IEKTGLTSWTGALGILPETFEQQVAGKPVVGYPALVDTGEAVDVRVLGTASEADRATRVG
VRRLLLLGTTPPWKRLLALLTNQQKLSLGHNPHGSVPLLLQDALACAVDSVVAEMPGARV
RSPEEFDRALAIVKQQAVPRVLQIVESLAPILDTARAVSLGLQGLTAPAAAEMATDLRRQ
LDSLIRPGFVADTGYRRLPHLKRYLAAMAERLEKGAQDLARDRERMVVVGAVEEEFTKFL
AGLAPHRRADEDVVDIGWLLQELRVSLFAQRLGTPQPVSAKRIYAAMDRAEAPQFS
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgagcacgccaaccctcctcggcgtgcccgcgaccgcaggcgtgccaccaac
cgtcgcccacgccaggagccgagcccccagcagcgcaccaagcgcgtcgaggcccgccgc
gccatgctgccgcccaagatcagctatccgccagagctgccggtcgccgagcgtcgcgac
gacatcgcggcagccattcgcgaccaccaggtcgtgatcgtcgcgggagagactggctcc
ggcaagaccacccagctgccaaagatctgcctcgagctgggccgcggcatcgagggcgcg
atcggccacacccagccccgccggatcgccgcccgctcggtcgccgaacggatcagcgaa
gagctggacgtcgagctcggcagcacggtcggctaccaggtgcgcttcaccgacaagtcg
accagggacacgctggtcaaggtgatgaccgacggcatcctgctctcggagctgcagcgc
gaccgtgacctgcgcagatatgacacgctcatcatcgacgaggcccacgagcgcagcctc
aacatcgacttcatcctcggctacctcaagcagctgctgccgcgccggcccgacctgaag
gtgatcatcacctcggccaccatcgacgtgcagcgcttcgccgagcacttcgctgagccc
gatggcaccccggcccccatcgtcgaggtgtcggggcgcagcttccccgtcgagatccgc
ttccgccccctgacccgccccggaccgcccgccaaggacggcaccgcccgcgacgtcgag
atcgaccaggtcaccggggtctgcgaggcggtcgaggagctgtggaccgaggaccccggc
gggggaccggccgacatcctcgtcttctgctccggcgagcgtgagatccgcgacgtcgcc
gatgccctcgatggcatgaacctgcccggcaccgaggtcctcccgctctatggccgcctc
tccgccgccgagcagcaccgcgtcttcagccggcactcggggcgccggatcgtggtgtcc
accaacgtcgccgagacctcactgaccgtcccgggcatccgctatgtcatcgacaccggg
acggcccggatctcgcgctactcccagcgactgaaggtccagcgcctgccgatcgaagca
atcagccaggccagcgccaaccagcgctccggccgctgcggtcgcctcgccgacggcatc
gcggtccggctctacagccaggaggacttcgagtcccggcccgagttcaccgagcccgag
atcctgcgcaccaacctggcctccgtcatcctgcagatgaccaacctgggactgggcgac
gtcgcccgcttccccttcctggagccacccgactcccgccagatcgccgacggggtccgc
ctcctggaagagctccaggccatcgacaccgacgccccggtgcacgtgccgcgccggcga
ctcacggcatacggccgggcgatcgtcgccctcccggtcgacccgcgcctggcccgcatg
gtgatcgaggccgagcgcaacggcgccctgcgcgagatgtcggtcatcgtcgcggcactg
tccatgcaggacccgcgtgagcgacctgctgacgcccaggcccaggccgaccagtcgcac
gcccgcttcaaggatgaggtgagtgacttcatcaccctgctcaacctgtggagctatctc
aaggagcagcagaaggcgttgtccggcagcgcatttcgacgcatgtgcaagcgcgagtac
ctgcactacctgcgcgtccgggagtggcaggacctgcacacccagctcaaacaggcaacc
aaatcacttgggctacaaccaaactccaacgaggcgaacgccgaccaggtccaccagtca
ctgttggccgggctgctctcccacgtcggtctctatgaccgggacaagcgggagtatgtc
ggggcgcggggggcacgcttcgtcatccagcccggctcggtcctgcaccgcaagaaccca
gactggctgatgaccgccgagctggtcgagaccacccggctgtgggcccgggtcaacgcg
ccgaccgacccggcgtgggtggagcgggccgcagcgcacctggtcaagcggtcctactcc
gagccgcgctggtcgcgcagccgggcctcggcgatcgcgaccgagcgggtcaccctctac
ggcgtgccgctggtcgcggaccggaccgtgccctatggccggatcgacccggaggtggcc
cgcgacctgttcatccggcacggactggttgagggcgactgggacacccggcacgacttc
ttccacgccaaccggcgcctgatccgcgacgtgagcgagctggaggcgcgggcgcgccgc
cgcgacatcctcgtcgacgacgagacgctggtcgagttctatgacgcgcggctcccggcc
gaggccgtctccggcgcgcacttcgacacgtggtggaagcaggcccgtcgcgccgactcc
acgctgctgaccttcaccgaggacctgctcgtcagcggcgacgcgtcgctggtcagtgac
cgggactatccggggacgtggcgtcagggtgagctggagtttgccgtcacgtatcagttc
gagcccgggtcgggctcggacggcgtgaccgtgcacgtcccgatcgaggtgcttaaccgg
gtgcgccccgacggcttcgactggcaggtgcccgggctgcgtgaggagctggcgacggcg
ctggtgaagtcgctgcccaaggagatccgccgcaacttcgtgcccgcgccggaccatgcg
cgggcggcgctggctgcgatcggggagccgcgcgacgagcaggaggcgctggtcgaggca
ctggccgacgagctgaccgcgcgccgcatcgtgccggtggcgccgtccgacttcgacgtg
gaccgtgtcccggaccacctcaaggtgacgtttgcggtggaacggtccgtggctccgggg
tcgaggcgggggcgcagccgggctcgggtcgagctgctcggcgagggcaaggacctggcc
gccctgcaggccgagctggccccggcagtgcggaccaccatgtcccgcgccgcagccagc
atcgagaagaccggactgacctcgtggaccggcgcgctcggcatactccccgagacgttt
gagcagcaggtcgccggcaagccggtggtcggctatcccgcgctggtcgacaccggtgag
gcggtcgacgtgcgggtgctcggcacggcctccgaggcggaccgggcgacgcgcgtcggg
gtgcggcgcctgctgctgctgggcaccaccccgccctggaagcgactgctggcgctgctg
acgaaccagcagaagctgtcgctcgggcacaacccgcacgggtccgtgccgttgctgctg
caggacgccctcgcgtgcgcggtcgactcggtggtggcggagatgccgggggctcgggtg
cgctcgccggaggagttcgatcgggcgctggcgatcgtcaagcagcaggcggtgcctcgc
gtcctgcagatcgtggagagcctggcgccgatcctggacacggcgcgcgcggtgtcgctc
ggcctgcaggggctgaccgcgccggcggcagccgagatggccaccgacctgcgtcgccag
ctggactcgctgatccggccggggttcgtggcggacacgggctatcggcggctgccccac
ctgaagcgctatctggcggcgatggccgagcgcctcgagaagggggcgcaggacctggcc
cgcgaccgcgagcggatggtggtagtcggggccgtcgaggaggagttcacgaagttcctg
gccggtctggcgccgcaccggcgggccgacgaggacgtcgtggacatcggctggctgctg
caggaactgcgggtcagcctgttcgcccagcgcctcggcacaccgcagccggtctcggcc
aagcggatctatgccgcgatggaccgcgcggaagccccccaattttcgtag
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