Ornithinimicrobium cryptoxanthini: NF557_08980
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Entry
NF557_08980 CDS
T08994
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocp03019
]
NF557_08980
Enzymes [BR:
ocp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NF557_08980
Messenger RNA biogenesis [BR:
ocp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NF557_08980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
USQ74806
LinkDB
All DBs
Position
complement(1943552..1946524)
Genome browser
AA seq
990 aa
AA seq
DB search
MSSPAERYAAARERNTRDRGAVGRFTARLDFPLDDFQLAAISAVDAGQGVLVAAPTGAGK
TIVGEFAVALALETGRKAFYTTPIKALSNQKYHDLVAQHGSDKVGLLTGDASVNGEAPVV
VMTTEVLRNMMYAGSHTLAGLGFVVMDEVHYLADRFRGAVWEEVIIHLPESVQVISLSAT
VSNAEEFGDWLRTVRGNMEVIVSEVRPVPLWQHMMVGKDLMDLFVHEGDGLVVDPSGPAQ
QTSINPELISRIMSTQRDARWRRDDAGGPRGRRGRPHGRDDRGRSGRGRAERSGGGYDRR
RGDGRPGGDDADHTRGHGGAGSLPGGTASRSEVIDRLDREGLLPAITFIFSRAGCEGAVT
QLLSRGTRLVPPQEGERIRRLVEERVAEVDERDLPVLGYHDFVEGLSRGFAAHHAGMLPL
FREIVEELFTAGRIKAVFATETLALGINMPARTVVLEKLVKFNGEEHAPVTPAEYTQLTG
RAGRRGIDIEGHAVVLHRRGLDPIDVAGLASTRTYPLRSSFRPTYNMAVNLVAQFGREVA
HELLQSSFAQFQADRAVVGLASQVRRNEEAMAGYAESMHCELGDFREYARLRRELSDAEK
TAARRRSASLRAEIAVSLEELSPGDVLSLPQGRRKGMAIVLTVPSKPGRSPEPSILDSDA
QLRRLTVHDLQDPVIPVARVAIPRGFNPRNVRSRKDLAATLRAQVPFEPPPSQWPSTEAA
GQRVRGHQGEPEQTRASGAGEGSGATRHTDPDELRSRLRAHPCHQCPDREDHARWAERWW
KLRRDTDDLQRRVSGRTNTVAKTFDRICTLLSELGYLTEDGQQVTDAGASLRRIYTEKDL
VAAQAITQGTWQRLDAAGLAAVVSTLIHEPRGSDESPSPRWPTTEVEEAFHEMVAIWSQL
TDREADHRLPLTGELDPGIAWMIHRWASGRALDEVLRDSELSAGDFVRRSKQVVDLLGQI
AQAADGPVSATARRATDAMLRGVVAADRMD
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcctgctgagcggtatgccgctgcccgcgagcggaacacgcgagacaggggg
gcggtcgggcggttcacggcacggctcgacttcccgctcgacgacttccagctcgcggcg
atctcggcggtggacgcggggcagggcgtgctcgtggcggccccgaccggagccggcaag
acgatcgtgggggagttcgccgtggctctcgcactcgagaccgggcgcaaggcgttctac
accacccccatcaaggcgctgagcaaccagaaataccacgacctcgtcgcccagcatgga
tccgacaaggtcggcctgctgaccggcgacgcgtccgtcaacggcgaggctcccgtggtc
gtcatgaccaccgaggtgctgcgcaacatgatgtatgccgggtcgcacaccctggccggc
ctgggcttcgtggtgatggacgaggtgcactacctcgcagaccgcttccgtggtgcggtc
tgggaggaggtgatcatccacctgcccgagtcggtgcaggtcatctcgttgtccgcgacg
gtcagcaacgccgaggagttcggcgactggttgcgcacggtgcgcggcaacatggaggtg
atcgtctccgaggtccggccggtgccgctctggcagcacatgatggtcggcaaggacctg
atggacctgttcgtccacgagggcgacggcctggtcgtcgatccctccgggccggctcag
cagaccagcatcaaccccgagctgatcagccggatcatgagcacgcagcgcgacgcccgc
tggcgccgcgacgacgcggggggcccgcgcggtcgtcgtgggcgcccgcacggccgggac
gaccgggggcggtctggtcgcgggcgggccgagcgcagcggtggtggctatgaccggcgg
cgcggcgacggccgacccggcggcgacgacgcggaccacacacgcggccacgggggtgcc
ggaagcctgcccggagggacggccagccgctccgaggtgatcgaccggctggaccgggag
gggctcctgccggcgatcaccttcatcttcagccgggctggctgcgagggggcggtcacc
cagctgctcagccgcgggacccgcctggtgccgccccaggagggcgagcggatccgccgc
ctcgtcgaggagcgggtggccgaggtcgacgaacgtgacctgcccgtgctcggctatcac
gacttcgtcgaggggctcagccgcgggtttgccgcacatcacgcgggcatgctcccgctc
tttcgggagatcgtcgaggagctgttcaccgcggggcggatcaaggccgtctttgccacg
gagacgctggcgctgggcatcaacatgcccgctcgcaccgtggtcctggagaagctggtg
aagttcaacggggaggagcacgctccggtcaccccggccgaatacacccagctcaccgga
cgcgccggacggcgagggatcgacatcgagggtcacgcggtcgtgctgcaccgccgcggc
ctggacccgatcgacgtcgcagggctggcctccacgcggacctatcccctcagatcctcc
tttcggcccacctacaacatggcggtcaacctcgtggcccagttcggtcgcgaggtcgcc
cacgagctgctccagtcctccttcgcccagttccaggcggaccgcgcagtcgtgggactg
gcgagtcaggtgcgtcgcaacgaggaggcgatggccggctacgccgagtcgatgcactgc
gagctgggtgacttccgggagtacgcgcgcctgcgccgcgagctcagtgatgccgagaag
accgccgcccgccgtcgctcggcctccctccgggccgagatcgcggtgagccttgaggaa
ctgtcccccggggacgtcctcagcctgccgcaggggcgtcgcaaggggatggccatcgtg
ctgaccgtgccgtccaagcccggccgctcaccggagccgagcatcttggactccgacgcc
cagctgcgccggctgaccgtgcacgacctgcaggacccggtgatcccggtcgcccgcgtg
gcgatccccaggggattcaacccgcgcaacgtgcgctcccgcaaggacctggcagccacg
ctgcgggcccaggtgcccttcgaaccaccgcccagccagtggcccagcacggaggcggcg
ggccagcgtgtgcgggggcaccagggtgagcctgagcagacccgggcctcaggtgcgggg
gagggcagtggtgcgacacggcatacggaccctgatgagctgcgcagccggttgcgagca
cacccgtgtcaccagtgcccggaccgtgaggaccacgcgcggtgggcggagcggtggtgg
aagctgcggcgcgacaccgacgatctgcaacggcgggtgagcgggcggaccaacaccgtg
gccaagacctttgaccggatctgcacgctgctcagcgagctcggctatctcaccgaggac
ggtcagcaggtgaccgacgcgggcgcgagcctgcgcaggatctacaccgagaaggacctg
gtggcggcccaggccatcacccagggcacgtggcagcgtctagacgcggccggtctggcg
gccgtggtctccaccctgatccacgagccacgcggcagcgacgagagcccgtcgccgcgc
tggccgacgaccgaggtggaggaggccttccacgaaatggtcgccatctggtcgcagctg
accgaccgggaggccgaccaccggttgccgctgaccggcgagctggacccggggatcgcg
tggatgatccaccgctgggcgtcgggccgggcgctggacgaggtgctgcgcgacagcgag
ctctctgcgggcgacttcgtgcggcgcagcaagcaggtggtggacctgctggggcagatc
gcgcaggcggctgacgggccggtgtcggccacggcccgccgcgccaccgacgcgatgctg
cgaggcgtcgtcgcagcggaccggatggactga
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