Ornithinimicrobium cryptoxanthini: NF557_11530
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Entry
NF557_11530 CDS
T08994
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03030
DNA replication
ocp03430
Mismatch repair
ocp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF557_11530 (holA)
03430 Mismatch repair
NF557_11530 (holA)
03440 Homologous recombination
NF557_11530 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocp03032
]
NF557_11530 (holA)
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_11530 (holA)
Enzymes [BR:
ocp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NF557_11530 (holA)
DNA replication proteins [BR:
ocp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NF557_11530 (holA)
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NF557_11530 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
B12-binding_2
TPR_4
Motif
Other DBs
NCBI-ProteinID:
USQ75252
LinkDB
All DBs
Position
complement(2483298..2484272)
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AA seq
324 aa
AA seq
DB search
MSDTPGLVLVSGPEQILAQRAVDTVLTTLRAHDPEVDVVKIPAADYEPGALGVHASPSLF
GGWTAIVVEDFDEADDALVEDAHALAHDLPEGVTLVVRHKSGNRGKRVLDVLKKSGRVIT
APAIKSDRDKVSFVQQEFKTASRQIEEPAVTALVQAVGKDVAELATACAQLIRDTTGRVR
AADVETYYGDKVETTGFKVADAALRGDTAEALRLLRHAFAGGLDPVPIIAVLAMQLRQVG
KVASAGRASAATLARDLGMAPWQIDQARRTAQGWDGIRLGTAIEAVAAADVEVKGGLRTG
TAVARDPEYAVERAVVAVCRARQG
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacaccccgggcctcgtcctggtctccggccccgaacagatcctcgcccagcgt
gcggtcgacaccgtgctgaccacgctgcgcgcgcacgaccccgaggtcgacgtcgtcaag
atccccgcggccgactatgagcccggcgccctcggcgtgcacgccagcccgtccctgttc
ggtggctggaccgcgatcgtggtcgaggactttgacgaggcggacgacgcgctggtggag
gacgcccacgccctggcccacgacctgcccgagggggtcaccctcgtcgtccgccacaag
agcggcaaccgcggcaaacgagtgctcgacgtcctcaagaagtcgggccgggtgatcacc
gcccccgccatcaagtccgaccgggacaaggtctccttcgtgcagcaggagttcaagacg
gcgtcgaggcagatcgaggagccggccgtcaccgctctggtccaggcggtcggcaaggac
gtcgccgagctggccacggcctgcgcgcagctgatccgcgacaccacggggcgggtccgg
gcggccgatgtggagacctactacggcgacaaggtcgagaccaccggcttcaaggtggcc
gacgcggccctgcgtggcgacaccgccgaggcgctgcgcctgttgcggcacgcctttgcc
ggcgggctcgacccagtcccgatcattgccgtcctggcgatgcagctgcgccaggtcggc
aaggtcgccagtgcgggccgggccagcgccgccacgctagcccgggacctcgggatggct
ccctggcagatcgaccaggcgcgccggacggcgcaggggtgggacggcatacgccttggc
accgcgatcgaggcggtcgccgcggcggatgtcgaggtcaagggtgggttgcggaccggc
acggcggtcgctcgagacccggagtatgccgtggagcgggccgtcgtcgccgtctgccgg
gcgcggcagggctga
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