Ornithinimicrobium cryptoxanthini: NF557_14250
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Entry
NF557_14250 CDS
T08994
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocp03019
]
NF557_14250 (hrpB)
Enzymes [BR:
ocp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NF557_14250 (hrpB)
Messenger RNA biogenesis [BR:
ocp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NF557_14250 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
ResIII
AAA_11
HA2_N
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
USQ75757
LinkDB
All DBs
Position
complement(3097727..3100327)
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AA seq
866 aa
AA seq
DB search
MTVDLVRIGRGLPFATAVPALQAAVRERGVAVVQAPPGTGKTTLAPPAVAEVLAAAAAPG
RVVVVQPRRIAARAAARRLAHLSGTPLGELTGFTVRGERRVSAGTRIEFCTPGVLLRRLL
ADPDLPGTAAVILDEVHERGIETDLLVGMLAELRGLRELVLVAMSATLDAPRFAALLTQG
QQGAHGRPDPAAVVDCPSALHPLEVRWLPPPGPRTDARGVADAFLEHVAVTTAETHHQAA
AVLGLPEPPDMLVFGPGLREIERLARRLRDLVPSAEVLELHGRLAPSAQDRVTAGPRAGE
APRIVVSTSLAESSLTVPGVRVVVDAGLAREPRRDAARGMTGLVTVAASRDAAIQRAGRA
ARQGPGLAVRCYDETTFAAMPAHVTPEVAVADLVGPVLTLACWGSPRGVGLALPDALPAG
ALHDAEVVLRRLGAIDEQGRATGLGARLAAVPADPRLARALLDGTELVGSRAAAEVVAAL
ADDHRPEGADLPALLRALRRGTAPGASRWKEEMRRLRDLATRHTDSRGTTDDAAGDPRPA
TVGDATGLVVALAHPDRVARRAGAAYLLASGTRAALPPGSLQGHEWLAVADVSRAQGRVA
AGTGAVIRSAAPLSSETAELAAAGLLTERTTAAFGDHRVTARRVRALGAIELSSVAVRLS
PEDARTAVESALATHGLSVFTWSPAADGLRRRLALLHRVHDDPWPDMSDAALTRHWREWL
GPEVDALAAGGRADRIDLHDPLRRLLPWPQASRLGELAPERLAVPSGRDVRIDYPAVDDP
DGRPVVAVKLQECFGWAETPTVAGVAVLFHLLSPAGRPLAVTDDLASFWSGPYAQVRAEM
RGRYPKHPWPEDPWTAPATARTRRRP
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtcgacctcgtccgcatcgggcggggcctgcccttcgccacggccgtccctgcc
cttcaggctgccgtccgtgagcggggggtcgcggtcgtccaggcgcccccgggcaccggc
aagacaacactcgccccgccggcggtggcggaggtgctggccgcagctgccgcgccggga
cgcgtcgtcgtggtgcagccgcgccgcatcgccgctcgggcagccgcccggcggctggcg
cacctgagtgggacaccgctaggggagctcaccggcttcaccgtgcgcggcgaacggcgg
gtgtcggcgggcacgcggattgagttctgcacacccggggtgctgctgcgccggctgctg
gccgacccggacctgcctgggaccgcagccgtgatcctcgacgaggtccatgagcgaggc
atcgagacggacctgctggtggggatgctggctgagctgcgcggcctgcgggagctggtg
ctcgtggcgatgtcggcgaccctcgacgccccgcgctttgcggccctcctgacgcaggga
cagcagggcgcacacgggcggcccgaccccgcggccgtcgtcgactgtccgtccgccctt
cacccgctcgaggtccggtggctgcccccaccgggtccgcgcaccgacgccaggggtgtg
gccgatgccttccttgagcatgtcgcggtcaccaccgccgagacacatcaccaggctgcg
gccgtcctcgggctccccgagcctcccgacatgctcgtcttcgggccagggctccgcgag
atcgagcgcctcgccaggcggctgcgtgacctcgtcccctcagccgaggtgctcgagctg
cacggccggctcgcccccagcgcacaggaccgggtgactgccggaccacgcgccggcgag
gcgccacgcatcgtggtctcgacctctctggcggagtcctcgctgaccgtcccgggggtc
cgcgtcgtcgtcgatgccggcctggcgcgtgagccccgtcgtgatgccgctcgcggcatg
accgggctggtcaccgtcgccgcctcgcgcgatgccgcgatccagcgcgccgggcgggcc
gcccggcagggtccggggctcgcggtccggtgctatgacgagaccacgttcgccgcgatg
ccggcgcacgtcacgccggaggtcgccgtcgccgacctggtcgggcccgtgctcaccctg
gcctgctggggctccccacgcggcgtcgggctcgcgctgccggacgccctgcctgccgga
gcgctccacgatgcggaggtcgtgctgcgtcggctcggtgccatcgacgagcagggccgt
gccacggggttgggggcccggctggcagcggttcccgctgatccgcgcctggccagggcg
ctgctcgacgggacggagctggtggggtcccgcgcggctgcggaggtggtggcggccctc
gccgacgatcaccgcccggagggcgccgacctgcccgcactcctgcgtgccctgcgccgc
ggcaccgcacctggagccagccggtggaaggaggagatgcggcggctgcgggacctggcc
actcggcataccgactcgagagggaccaccgatgacgcggcaggtgatccacgccccgcc
accgtgggggatgccaccggcctggtcgtcgcgctcgcgcacccggaccgcgtcgcgcga
cgcgcgggtgcggcctacctgctcgcgtcgggcacgcgagccgcactcccgcccggcagt
ctgcaaggccatgagtggctggcggtcgcggacgtgtccagggcccagggacgggtcgcg
gccgggaccggcgcggtgatccgctccgccgcaccactgagcagcgagaccgccgagctc
gcggcagccggactgctcaccgagcgcaccacggcggccttcggcgaccatcgggtgacc
gcccgccgggtccgcgcgctcggggcgatcgagctctcctccgtcgcggtgcggctgagc
ccggaggacgcccgcaccgccgtcgagtcagcgctggcgacccacgggctctcggtcttc
acctggtcgcctgccgctgacgggctgcgccgtcgcctggccctgctgcaccgcgtccac
gacgacccgtggcccgacatgtccgacgccgccctgacccggcactggcgcgagtggctg
ggccctgaggtcgacgcgctcgccgcgggtggccgggccgaccgcatcgacttgcacgat
ccgctgcgtcgtctgctgccctggccgcaggcgtcccggctgggcgagctcgcgccggag
cggctggccgtgccgagcgggcgcgacgtgcggatcgactatccagcggtcgacgatccc
gacggacggccggttgtcgcggtcaagctccaggagtgttttggatgggcggagacgccg
acggtggccggggtggcggtgctcttccacctgctctcgccggctggacgcccgctcgcg
gtcaccgacgacctggcctcgttctggtccgggccctacgcccaggtgcgggccgagatg
cgcgggcgctatccgaagcacccgtggccggaggatccgtggacggctcccgcgaccgcg
cgcacccgccgccgcccctga
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