Ornithinimicrobium cryptoxanthini: NF557_16350
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Entry
NF557_16350 CDS
T08994
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NF557_16350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_16350
Enzymes [BR:
ocp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NF557_16350
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NF557_16350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_22
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
USQ76137
LinkDB
All DBs
Position
3541222..3544644
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AA seq
1140 aa
AA seq
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MTAEVDARTAGRETMTVQEFAITDPLPSGTMLLEASAGTGKTWTIAALVTRYVAEGVALL
EQMLVVTFSRAASQELRARVREQLAEAEAVLAGRQQPDPDNELLALLLDVDEQTRALQHA
RVRTALTNFDAATIATVHQFCHEVLRSLGVAGTSDASAELVEDLGDLLVEVVDDLYLRGF
RGETEPIFSRSEALVIARAAVEDIHAELRPTTAEPGTPAARRVRFAQAVRDELDLRKRRL
QVMHYNDLLTQLSDALGEPDSPARHRMRQRWQVVLVDEFQDTDPVQWQVLDRAFSGHAQA
MVLIGDPKQAIYAFRGGDIVTYLAAAGSASDRRTLPRNYRSDPGVVHALTTLLEGTQLGH
PEITVRAVTAAKEGARLQGAPHGSPVRVRQLLLGEHLSDDDRIAPTRAHIARDLALDIAA
LLASGATFDDRPVQAHDVAVLAHRGKDLLAAQRALREVGIHAVSAGGSNVLESGAAHDWL
TLLEAMAAPHRSVLTRAAALTDLLGYAVPEVDAGGADLDDQLAQHARDLASTYARQGIAA
VLERLTVDGLTARVLGQVGGERTLTDIKHLAELLHEAGRSHQLGLVALLEWLRAQLAQDS
SASAGARTRRLDSDSAAVQLLTIHGSKGLQFPVVYLPSLTDRNVPDTPHVPLCHDDPPER
TRYIDVGGRAGPQWADSVRRHKEEDAGESLRLLYVALTRAQSQVVTWWSPTSRNGGPSAL
HRVLFGRKPVAEPESVDGAVPATAPVPKEDDAASRTLQAWSDLGAFTLERADHAGPVAVP
TPDDARDPRVAEWTRRVDHDWRRTSYTALSTPREQEAHALTGGVGSEPEVTARQDEPELP
EPVLEATPALPGLSPEPPGADVPSPMADLPVGATFGSLVHGVLEHADPEAADLRSELLGH
IREQLVQWPVDLDPEMLADALVAVNDTPLGPLAGGTTLRQIGQRDRLRELDFELPLGGGD
LPDGAAAHATLGELVPLLREHLPAGDPVRAWADTLDQSPDLAAQHLRGYLTGSVDVVLRT
GGSYLVVDYKTNWLGRTEEPLTAADYRPQMLAEAMGHSSYPLQALLYAVVAHRFLRWRLR
DYDPARHLGGVLYLYVRGMCGPQTPLVDGHPCGVFSWKPPVALVTAVSALLDGRPEESAA
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaggttgacgccaggaccgccggaagggaaaccatgaccgtgcaggagttc
gcgatcaccgaccctctgccgtcgggcacgatgctgctcgaggccagcgccggcaccggc
aagacctggaccatcgcggccctggtcacgcgctatgtcgctgagggcgtggccctgctt
gagcagatgctggtcgtcaccttcagccgagccgccagccaggagctgcgcgcgcgggtg
cgtgagcagctcgctgaggccgaggcggtgctggccggccggcagcagcccgacccggac
aacgagctcctggcgctcctgctcgacgtcgacgagcagacccgcgccctgcagcacgcc
cgggtgcggaccgccctgaccaacttcgacgcggcgaccatcgccaccgtgcaccagttc
tgccacgaggtgctgcgcagcctcggcgtcgccggcacctccgatgcctccgccgagctg
gtggaggacctgggcgacctgctcgtcgaggtcgtcgatgacctctatctgcgcggcttc
cgcggggagaccgagccgatcttcagccggtccgaggcactggtgatcgcccgtgcggcc
gtcgaggacatccacgccgagctgcgccccaccacggccgagcccggcacccccgccgcg
cgccgggtccgttttgcccaggcggtccgcgacgagctcgacctgcgcaagcggcgtctg
caggtgatgcactacaacgacctgctcacccagctctccgacgcgttgggagagcccgac
tctcccgcgcgacaccggatgcggcagcgctggcaggttgtcctggtcgacgagttccag
gacaccgaccccgtccagtggcaggtcctggaccgcgccttcagcggccatgcccaggcg
atggtcctgatcggcgaccccaagcaggcgatctacgccttccgcggcggcgacatcgtg
acctatctcgcggcggcgggcagcgcctccgaccgcaggaccctgccccgcaactatcgc
tccgatcccggcgtcgtccacgcgctgaccaccctgctggaaggcacgcagctcgggcac
ccggagatcaccgtccgcgcggtcaccgctgccaaggagggggcccggctgcagggggca
ccccacgggtcaccggtgcgggtccgtcagctgctgctcggtgagcacctgtccgacgac
gaccggatcgcgcccacccgcgcgcacatcgcccgtgacctggctctcgacatcgccgcg
ctcctggcctccggcgccaccttcgacgaccgtcccgtccaggcccacgacgtcgccgtg
ctcgcccaccgcggcaaggacctgctcgccgcccagcgagccctgcgcgaggtcggcatc
catgccgtgagcgccggcgggtccaacgtcctcgagagcggcgcggcccacgactggctc
accctgctggaggcgatggcggcgccgcaccgctcggtgctgacccgggccgccgccctg
accgacctgctcggctatgccgtgcccgaggtcgatgccgggggcgccgacctggatgac
cagctcgcccagcacgcgcgcgacctggccagcacctatgcccggcagggcatcgccgcc
gtcctcgaacggctcaccgtcgacggcctcaccgcccgggtcctgggccaggtcggcggc
gagcgcaccctcaccgacatcaagcacctcgcggagctgctgcacgaggcggggcgctcg
caccagctcggactcgtggcgctgctggagtggctgcgggcacagctggcccaggactcg
tcggcgtcggcaggtgcccgcacccgccggctggacagtgactccgccgccgtgcagctg
ctcaccatccacggcagcaagggtctgcagttccccgtcgtctatctgccgagcctgacc
gaccgcaacgtccccgacacgccccacgtccccctgtgccacgacgacccgccggagcgc
acccgctatatcgatgtcggcggccgggccggcccccagtgggccgactccgtgcggcgc
cacaaggaggaggacgccggggagtccctgcgcctgctctatgtcgcgctgacgcgcgcg
cagtcccaggtcgtgacgtggtggtccccgaccagccgcaacggtggaccctccgcgctg
catcgggtcctgttcggtcgcaagccggtcgctgagccagagtccgtcgacggcgctgtt
cccgccaccgcccctgtccccaaggaggacgacgccgccagccggaccctgcaggcctgg
tccgacctcggcgcattcaccctggagcgggccgaccacgcgggccccgtcgccgtcccc
acccccgacgacgcacgcgatcctcgggtcgccgagtggacccgccgggtggaccacgac
tggaggcgcacgtcatacaccgcgctgtccacgccgcgtgagcaggaggcccacgccctg
accggcggcgtagggagcgagcccgaggtcaccgcgcgacaggacgagccggagctgccc
gagccggtcctggaggcaacgccggccctgccgggtctcagccccgagccgccgggtgcc
gacgtgccctcgccgatggcggacctgccggtcggcgcgacgtttggctccctagtccac
ggggtcctcgagcacgccgaccccgaggccgccgacctgcgctcggagctgctcggccac
atccgcgagcagctcgtccagtggccggtcgacctcgacccagagatgctcgccgacgcc
ctggtcgcggtcaacgacaccccgctggggccgctcgccggtgggacgacgctgcggcag
atcggtcagcgggaccggctgcgcgagctggacttcgagctgccgctgggcggtggagac
ctcccggatggggcggccgcgcacgcgacgctcggcgagctggtcccgctgttgcgcgag
catctgccggccggcgacccggtccgggcctgggccgacaccctcgaccagtcccccgac
ctggcagcccagcacctgcgcggctatctcaccggctccgtcgacgtggtcctgcgcacc
ggcgggagctatctcgtcgtcgactacaagaccaactggctcgggcgcaccgaggagccg
ttgaccgctgccgactaccgcccacagatgctggccgaggccatgggtcactcgtcctac
cccctgcaggcgctgttgtatgccgtggtagcccaccggttcctgcggtggcggctgcgc
gactatgacccggcccgtcacctgggcggcgtgctctatctctatgtgcggggcatgtgc
ggcccgcagacgccgctggtggacgggcacccgtgcggggtcttctcgtggaagcccccg
gtcgccctggtcacggccgtctctgccctgctcgacggacgccctgaggagagtgcggca
tga
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