Ornithinimicrobium cryptoxanthini: NF557_16355
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Entry
NF557_16355 CDS
T08994
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NF557_16355 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_16355 (recD)
Enzymes [BR:
ocp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NF557_16355 (recD)
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NF557_16355 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
RecD_N
UvrD-helicase
NAT10_TcmA_helicase
AAA_22
SH3_13
AAA_16
PhoH
SLFN-g3_helicase
AAA_28
nSTAND3
TraI_hel_assoc_N
NTPase_1
AAA_29
NACHT
Motif
Other DBs
NCBI-ProteinID:
USQ76138
UniProt:
A0ABY4YH85
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All DBs
Position
3544641..3546461
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AA seq
606 aa
AA seq
DB search
MTILETFEPIGEHDRRLALGATGVLAEFNQAGVITAADVHVASTLARVTHEKDADAVLAT
ALANRAVRTGSVAVDATALATTGRQTLPDLPWPEPEDWAESVAGSRLVAEGAVVVDRGLV
YLQRYHHQEVQVVADLRARAALEPPTVDEATLAAGLTRIFPGEQYAEQRAAAEVTARART
SVITGGPGTGKTTTVAGVLALLAEQAAAAGERPLRVGLAAPTGKAAARVKVAVARALDEI
LERTDDPATRSVIAPLGAVEPTTLHRLLGWRPDSRTRFRHDRTNRLPHDVVLVDEASMVS
LTHMARLLEALRPQARLILVGDADQLVSVDAGAVLADLVAGAQLAQNSPVALARLSTVHR
FGKTIGALAEALRTGDGDAVVSALSAGSAEVEWVTDEDPRPFLQPLLTRHARAVLTAARA
ADGDAALAALGAHRLLCAHREGPHGVRTWNRLTETWLGEDTGLTFYDPMYVGRPLIVTAN
DYATGVLNGDTGVIVASHKPDGTPVRMAVVEGAAGAHRFAPSRLGDVDTMHAMTIHKAQG
SQAREITVLLPDSDSPLLTRELFYTAVTRAEEKVRVVGGEEVVRAAVARQVQRASGLRQR
LAEADS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcctggagacctttgagccgatcggtgagcacgaccggcgtctggcgctcggc
gcgacgggcgtcctggcggagttcaaccaggccggggtgatcaccgccgcggacgtgcac
gtcgccagcacgctggcccgggtcacccacgagaaggacgccgacgccgtgctcgctacc
gccctggccaaccgcgccgtccgcaccggctcggtcgcggtcgacgccactgctctggcg
accaccgggaggcagactctgcccgacctgccgtggccggagcctgaggactgggccgag
tcggtcgcggggagccggctggtcgccgagggcgcggtggtcgtggaccgcggactggtc
tatctgcagcgctaccaccaccaggaggtgcaggtcgtcgcggatctgcgggcgcgggca
gcgctcgagccgcccaccgtcgatgaagccaccctggccgccgggctgacccggatcttc
ccgggcgagcagtatgccgagcagcgcgcggccgccgaggtcaccgcccgcgcccgcacc
agtgtgatcaccggggggcccggcactggcaagaccacgaccgtcgcgggtgtgctggca
ctgctggccgagcaggccgcagcggcgggcgagcgcccgctgcgggtcgggctggcagcc
cccaccggcaaggccgcggcccgcgtcaaggtggcggtggcccgtgcgctcgacgagatc
ctggagcgcaccgacgaccctgcgacccggtccgtcatcgcaccgctcggagcggtcgaa
cccacgacgttgcaccggttgctggggtggcgcccggacagccgcaccaggttcaggcac
gaccgcaccaaccggctgccccacgatgtcgtgctggtcgacgaggcctcgatggtctcc
ctgacgcacatggcccggttgctggaggccctgcgcccccaggcccggctcatcctcgtc
ggtgacgcggaccagctggtgtcggtggacgcgggcgctgtcctggccgacctggtcgcc
ggcgcccagctggcgcagaactctcccgtcgccctggcccggctgagcacggtgcaccgc
ttcggcaagaccatcggtgccctcgcggaggcgctgcgcaccggtgatggtgacgccgtg
gtgtcggcgctgtcggctggcagcgccgaggtggagtgggtcaccgacgaggatccccgg
ccgttcctgcagccgctgctcacccggcacgctcgcgcggtcctgaccgccgcccgggcc
gccgacggtgacgccgcgctggccgcgctcggggcacaccgcctgctctgtgcgcaccgg
gaggggccgcacggtgtccgcacctggaacaggctgaccgagacctggctgggcgaggac
accgggctgaccttctatgacccgatgtatgtcgggcgtcccctgatcgtcaccgccaac
gactacgccaccggggtgctcaacggcgacaccggcgtcatcgtcgcgtcacacaagccc
gacggcacgccggtgcggatggccgtggtcgagggggcggccggggcgcaccgctttgcc
cctagtcggctcggcgacgtcgacaccatgcacgcgatgacgatccacaaggcccagggc
agccaggcgcgcgagatcaccgtcctgctcccggacagcgacagccccctgctcacccgc
gagctgttctacaccgccgtgacccgcgccgaggagaaggtccgggtcgtcggcggcgag
gaggtcgtgcgggccgccgtggcccgtcaggtccaacgggccagcgggctgcggcagcgg
ctggctgaggccgacagctag
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