Ochrobactrum sp. MT180101: HGK82_04130
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Entry
HGK82_04130 CDS
T07147
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ocr
Ochrobactrum sp. MT180101
Pathway
ocr03030
DNA replication
ocr03430
Mismatch repair
ocr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HGK82_04130 (dnaE)
03430 Mismatch repair
HGK82_04130 (dnaE)
03440 Homologous recombination
HGK82_04130 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocr03032
]
HGK82_04130 (dnaE)
03400 DNA repair and recombination proteins [BR:
ocr03400
]
HGK82_04130 (dnaE)
Enzymes [BR:
ocr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HGK82_04130 (dnaE)
DNA replication proteins [BR:
ocr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HGK82_04130 (dnaE)
DNA repair and recombination proteins [BR:
ocr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HGK82_04130 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
QOD64439
LinkDB
All DBs
Position
1:863507..866998
Genome browser
AA seq
1163 aa
AA seq
DB search
MSDAAAGNAAKDGALTPRFVHLRVHSAYSLLEGALPLGKIIKQAIADEAPAIAVTDTNNL
FGALEFAQKASKDGLQPIIGCQVDIAFGDHNDNGRSVNRRVALDLAPVVLLAATEEGYAN
IVRLVSRAFLETPAGDPVHVEASWLPPLSKDVIVLSGGALGPIGRAFAADRPDRAETRLA
FLREAFGDRLYVELQRQAGYDRALEAKTVALAYEMDLPLVATNEAFFLKAEDFEAHDALL
AIAEGQILSNDDRRRLTPDHHMKSRAEMAALFADLPEALDNTVEIAERCSWYTQTRAPIL
PRFTGESDDAEAAVQEEADELARQAREGLKMRLETVGLAEGYTTEQYAERLEYEIGIITR
MKFPGYFLIVADFIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNP
DRVSMPDFDIDFCQDRREEVIRYVQGKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYG
QVDRLCKLVPQNPANPVSLAQAIDTEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHA
AGIVIGDRPLSELVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLETAVKLV
ARKGVEIDLSHVPLDDELTYEMLSRGETVGVFQVESAGMRKALLGMRPDRIEDIIALVAL
YRPGPMENIPTYNARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGE
ADLLRRAMGKKIREEMDKQRVRFVDGAIEGGVDKAQANMIFDLLAKFADYGFNKSHAAAY
AIVSYQTAYMKAHYPVEFIAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVMTSFRPFE
VGEKQIFYSLSAIKGVGEAAVDHIVDVRAEKPFESLEDFCERVDPRIVNRRVLESLINAG
AMDCFGRERPAMSAGMDRIMGFAQRTQENAASGQSDIFGLSGAPKETLILPQAAPWLPSE
MLHREFQAVGFYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGANAGRLAGTVTARQERK
TRTGNKMGIVQLSDASGQFEAVLFSEGLAQYRDLLESGKSVVITVQAENRPEGIGLRIQT
VQSLEDEACRMQKALRLYLRSADAVRHIAPHFNTRGDGQVSLIVIKDNGQREVEIELPHR
YRVSPQIASAMKAIQGVVDVELV
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgcagcagcaggcaatgcagcaaaagacggtgctttgacgccacgttttgtg
cacctgcgggtacactcggcctattccttgctggaaggcgcattgccgctcggcaagatc
atcaaacaggcgattgccgacgaggcgccggctatcgcagtcaccgacaccaacaatctg
ttcggtgcgcttgaatttgcgcagaaggcatcgaaagacgggctgcaacccatcatcggt
tgtcaggtcgatatagccttcggcgatcacaatgataatggccgcagcgtcaatcgccgt
gtcgcgctggacctcgctccagttgtgctgctggcggcaacggaagagggctatgcgaat
atcgtgcggctcgtcagtcgcgcgtttctggaaacaccggcaggtgatccggtgcatgtc
gaagcaagctggctgccaccattgtcgaaagacgtcattgttctttccggcggcgcattg
ggaccaatcggtcgcgcttttgccgccgaccgtcccgacagggcagagacacggcttgct
ttcctgcgtgaagcatttggcgatcggctttatgtcgaattgcagcgtcaggcaggttac
gaccgtgcgctggaagcaaagaccgtcgcgcttgcctatgagatggatctgcctctcgta
gccaccaatgaggcattctttctcaaggcagaagacttcgaggcccacgatgcgcttctt
gccatcgcggaaggccagattctctcaaacgatgatcgccgccgcctgacgccggaccat
cacatgaaaagccgtgcggaaatggctgcgctttttgccgatctgccggaagcgctcgac
aacaccgtcgaaattgcagagcgttgcagctggtacacgcagacccgtgcaccgatcctg
ccgcggtttactggcgaatccgatgatgcggaggccgccgttcaggaggaagccgacgag
ctggcgcggcaggcccgcgaaggcctgaagatgcgcctggagaccgtcggtctcgcagaa
ggctatacgacggagcaatatgccgaacgtctcgaatacgagatcggcatcatcacccgc
atgaagttcccgggctacttcctgatcgttgcggactttatcaaatgggcgaaagcccat
ggcattccggtcgggccgggccgtggctcgggtgccggttcgctcgtcgcctatgcgctg
acgattactgacgtcgatcctttgcggttctcgctgcttttcgaacgcttcctcaacccg
gatcgcgtttcgatgcccgacttcgatatcgacttctgtcaggaccgccgtgaagaggtg
atccgctatgtgcagggaaagtacgggcgagatcaggtagcccagatcatcacgttcgga
accctgcaggcacgcgctgtgctgcgcgatgtcggtcgcgttctggaaatgccttacggg
caggtcgatcgtctctgcaagctggtgccgcaaaacccggccaatccagtgtcactggca
caagccatcgacacagaaccgaagatcaatgaggagcgtgagaaagagccggtggtcgga
cggctgctggatatggctctcaagcttgaagggctttaccgccacgcctcgacccatgcc
gccggtatcgtgatcggtgaccgtccgctgtcggaactggtccccatgtatcgcgatccg
cgttccgacatgcccgtcacccagttcaacatgaaatgggtggagcaggcgggactggtc
aagttcgattttcttggtctcaagacgctgaccgtccttgaaacggccgtcaaactggtg
gcgcggaagggcgttgagattgacctatcccatgtgccgctcgacgacgaactgacctat
gagatgttgtcgcgcggcgaaaccgtcggcgtgttccaggtggaaagtgcgggtatgcgc
aaggcgctgctcggtatgcgcccggaccggatcgaagatatcatcgcgcttgtggcgctt
tatcgtcctggtccgatggagaacatcccgacctataatgcgcgcaagaacggtgaggag
gagattgcctccattcacccgaagatcgatcacctgatcaaggaaacgcagggcgttatc
gtctatcaggaacaggtgatgcagatcgcacaggtgctttccggctattcgctcggggaa
gctgaccttttgcgtcgcgccatgggcaagaagatccgcgaggaaatggacaagcagcgc
gtccgcttcgtggatggcgcgattgagggcggtgtcgacaaggcgcaggccaacatgatc
ttcgatctgctggccaagttcgctgactacggcttcaacaagtcgcacgccgccgcctat
gccatcgtgtcctaccagacggcctatatgaaggcccattatccagtcgagttcatcgcc
gcgtcgatgacctacgatatgtcgaacaccgacaagctcaacgatttccgccgcgaggca
aaccgtttgggcattgaggtcgtgccgccttcggtgatgacgtccttccgtccgtttgaa
gtcggcgaaaagcagattttttattcgctttccgccatcaagggcgtcggcgaggccgcc
gtcgatcatattgtcgatgtgcgcgccgagaaaccttttgaaagccttgaggatttctgc
gagcgggtcgatccgcgcatcgtcaaccggcgcgtgctggaaagtctcatcaatgccggt
gcgatggattgtttcggtcgtgagcgcccggccatgagtgcgggcatggaccgcatcatg
ggctttgcccagcgcacgcaggaaaatgccgcaagcggtcagtccgatatttttggtttg
tcaggcgctccgaaggaaacgcttatcctgccgcaggcggctccctggctgccatcggaa
atgctgcatcgggagtttcaggcggtcggcttctatctgtcagcccacccgctcgatgaa
tatcgcgatgtgctgaaccgcatgcgtgttcaaagctgggcagatttttcagcagccgtg
aaacgcggcgccaatgccggtcgtctcgcgggcaccgtgactgctcggcaggagcgcaag
acacgcaccggcaacaagatgggtatcgtgcaattgtccgatgccagcggccagttcgaa
gcggtgctgttttcagaagggctggcgcaatatcgcgaccttctggagagcggcaagtcg
gtggtgatcacggttcaggcggaaaaccgtcctgaaggtataggcttgcgtatccagacg
gtccagtcgcttgaagatgaggcctgccgtatgcagaaggcgttgcggctttacctgcgc
tcggccgatgcggttcgtcatatcgcaccgcatttcaacacgcgcggcgacgggcaggtg
agcctcatcgtcatcaaggataacggtcagcgtgaagtcgagatcgagctgccgcatcgc
tatcgcgtcagtccgcagatcgccagcgccatgaaagccattcagggcgtcgtggatgtg
gaactggtgtga
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