Ochrobactrum sp. MT180101: HGK82_06305
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Entry
HGK82_06305 CDS
T07147
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ocr
Ochrobactrum sp. MT180101
Pathway
ocr03410
Base excision repair
ocr03430
Mismatch repair
ocr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HGK82_06305 (recJ)
03430 Mismatch repair
HGK82_06305 (recJ)
03440 Homologous recombination
HGK82_06305 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocr03400
]
HGK82_06305 (recJ)
DNA repair and recombination proteins [BR:
ocr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HGK82_06305 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HGK82_06305 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HGK82_06305 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
CDC45
Motif
Other DBs
NCBI-ProteinID:
QOD64840
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Position
1:complement(1311619..1313403)
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AA seq
594 aa
AA seq
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MTTERFFLGIKQSATGQKWVDRLGLREANTALAIAQHHGISDLVARVLAGRGVSVESAPE
FVDPTLRNLMPDPATLTDMENAASRIADAILRRETVAIFGDYDVDGACSSALMARFLKHY
GIQHSIYIPDRIFEGYGPNPDAMRDLVAKGATLIVTVDCGTNSAPSITAAKQAGADVVVL
DHHQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLAQVTKILRERGKGPGPDLL
SLLDLVALATVCDVVPLTGVNRAFVVKGLVVARSQSNVGLAALARVARIGEPLNVFHLGY
LIGPRINAGGRIGDAGLGARLLTLDDPATADRIAVELDRLNQERQAMEAEMLMEAEAEAS
LEISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSIMGL
DLGKLVRGAVERGLLVKGGGHAMAAGITIERANLGALRAYLEEESAHIVSRLRENQSLSI
DGALAASGATVSLYEALQKAGPYGSAHPQPILALPHHILADVRGVGRDHVRVALRGADGK
RVNAIAFRAAEGDLGRFLFNNIGQSVHVAGNLSLNHWNGSVTPQIQILDAALPV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagagcgctttttcctcggaataaaacaatccgcaaccggacagaaatgggta
gaccggcttggcctgcgggaggccaatacggcgcttgccattgcgcagcatcacggcatt
tccgatctggttgcacgcgtgcttgccgggcggggggtgtcggtagaaagcgcgccggaa
tttgtcgatccgacgctgcgcaatctcatgcccgacccggcgacgctcacagatatggaa
aatgcggcaagccgtattgccgatgccattctgcgtcgcgagaccgtggccatttttggc
gactacgatgtcgatggggcgtgttcttccgccttgatggcgcgttttctcaaacattac
ggcattcagcactccatctatattcctgaccggatttttgaaggttacggccccaatccc
gatgccatgcgcgatctggtcgccaagggtgcgacccttatcgtcacagtcgattgtggc
accaacagcgcaccgtcgattacagccgccaagcaggctggagcggatgtcgtcgtgctc
gatcaccatcaggtcggcggcgatctgcctgaagatgcggtggctatcgtcaatcccaac
cgggaagacgatatttcgcagcaggggcatctttgcgccgcaggcgtggtctttctgaca
ttggcacaggtgaccaaaatcctgcgtgagcgcggcaagggaccaggccctgatcttctt
tccctgctcgatctggtggcgctggcaacggtttgcgatgtggtgccgttgaccggcgtg
aaccgcgctttcgtcgtcaaaggactggtcgttgctcggtcgcagagcaatgtcggcctt
gcggctttggcgcgcgttgcccgcattggcgaaccgctcaatgtctttcacctcggctat
cttatcgggccgcgcatcaatgctggcgggcgtatcggcgatgcggggcttggcgctcga
ttgctcacgctggatgatcccgcaaccgcggatcgtattgccgtggaacttgaccggctc
aatcaggagcgtcaggccatggaagccgagatgcttatggaggcggaagcggaagcttcg
ctggaaatatccggcggtgcgggcgcatcggtgatcgtgacggcaagtgaccgctggcat
cccggtatcgtcgggttgctggcctcgcggcttaaggaaaaggcccggcggccagccttt
gccattgctttcaacgccaatggtgtcggatcgggttccggtcgctcgatcatggggctt
gatctcggcaagctggtgcggggcgcggtggaacgcgggctgctcgtcaagggtggtggc
catgccatggcggccggtatcaccatcgagcgcgcaaatctcggcgcgttgcgggcttat
cttgaagaagaatcggcgcatatcgtttcgcgcctgcgcgaaaaccagagcctgtccatc
gacggtgcgctggccgcatcgggcgcaacagtgtcgctctacgaagccttgcagaaggct
gggccctatggttctgcgcatccgcagcctatattggcgctgccgcatcatatattggcc
gatgtgcgtggcgtggggcgcgatcatgtgcgtgtcgcgttgcgtggcgcggatggaaag
cgcgtcaatgccatcgccttccgggcggcggaaggcgatctggggcgcttcctgttcaac
aatatcggtcagagcgtccatgtggcaggcaatctgtcactaaatcattggaatggctcg
gtcacgcctcagatacagattctggatgccgctttgcctgtttaa
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