Ochrobactrum sp. MT180101: HGK82_08000
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Entry
HGK82_08000 CDS
T07147
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ocr
Ochrobactrum sp. MT180101
Pathway
ocr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ocr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HGK82_08000 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocr03021
]
HGK82_08000 (rpoD)
Transcription machinery [BR:
ocr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HGK82_08000 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Imm3
DUF5856
DUF4351
EFhand_Ca_insen
Motif
Other DBs
NCBI-ProteinID:
QOD62754
LinkDB
All DBs
Position
1:complement(1662235..1664253)
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AA seq
672 aa
AA seq
DB search
MATKVKENEEAEVEREGAADGPLLDLSDDAVKKMIKLAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVVEDDEQDNDREENNDDDSEEGGDLVESGGTAVATTTTKKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDQLN
DSNILLREIIDLETTYAGPEAKQAPVIERVEEEKPRDDKPQRRSRDDDDITNVGGDMPAE
EEEEDEDEANLSLAAMEAELRPQVMETLDLIADTYKKLRKLQDQQVEGRLAATGELSSSQ
ERRYKELKDQLIKAVKSLSLNQNRIEQLVEQLYDINKRLVQNEGKLLRLAESFGVRREEF
LKEYQGHELDPKWVERVSTLSARGWKEFAAKEERAIDRLRSEIQMLATETAISIGEFRRI
VNQVQKGEREATIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPE
ELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLR
DTTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP
SRSRKLRSFLDS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaggttaaggaaaacgaagaagccgaagtcgagcgcgaaggtgctgccgac
ggtccgcttctcgacctttctgacgatgctgtcaagaagatgatcaaactcgcgaagaag
cgcggctacgtcaccatggacgagctgaatgctgtgctgccttccgaggaagtgacatcc
gagcagatcgaagacacgatgtcgatgctttccgatatgggcatcaacgtcgttgaagat
gacgagcaggacaacgaccgcgaagaaaacaacgacgacgactcggaagagggcggcgat
ctggtcgaatccggcggtacggctgttgccaccaccacgaccaagaaagagccgaccgac
cgtaccgacgatccggtgcgcatgtatctgcgcgaaatggggtccgtcgagcttctgtcg
cgcgaaggcgaaatcgcgattgcaaagcgcatcgaggctggtcgcgagaccatgatcgcc
gggctttgcgaaagcccgctgaccttccaggcgatcatcatctggcgcgaccagctgaac
gattccaacattctgctgcgcgaaattatcgacctcgaaaccacctatgccggtccggaa
gccaaacaggccccggtgatcgagcgcgtggaagaggaaaagccgcgcgatgacaagcct
cagcgccgctcgcgtgatgacgacgacattaccaatgtcggcggcgacatgcccgcggaa
gaggaagaagaggacgaggacgaagccaacctgtcgctggcggccatggaagccgagctg
cgtccgcaggtcatggaaacgctcgatctcatcgccgacacctacaagaagctgcgcaag
ctgcaggatcagcaggtcgagggccgtctggccgcgacgggcgaactgtcgtcgagccag
gaacgtcgctacaaggaactgaaggatcagctcatcaaggcagtgaagtcgctgtcactg
aaccagaaccgtatcgaacagctcgtcgaacagctttacgacatcaacaagcgtctggtg
cagaacgaaggcaagctgctgcgtctggccgaatccttcggtgtgcgtcgtgaggaattc
ctgaaggaatatcagggtcacgagctggacccgaaatgggtagagcgcgtgagcacgctt
tcagcccgtggctggaaggaatttgcagccaaggaagagcgcgccatcgaccgtctgcgt
tcggaaatccagatgctggcgaccgaaaccgcgatctccatcggcgaattccgccgtatc
gtcaatcaggtgcagaagggcgaacgcgaagcgaccatcgccaagaaggaaatggtggaa
gccaaccttcgtctcgtcatctcgattgccaagaagtacacgaaccgtggtctgcagttc
ctcgatctcattcaggaaggcaatatcggtctgatgaaggcggtcgacaagttcgaatat
cgtcgtggttacaagttctcgacctatgcgacatggtggattcgtcaggcaatcacccgt
tcgattgccgatcaggcgcgcaccatccgtattccggtgcacatgatcgaaacgatcaac
aagatcgttcgtacatcgcgccagatgctgcatgaaatcggtcgtgagccgacgccggaa
gaactggctgaaaagctcgccatgccgctcgaaaaagtgcgcaaggtgctgaagatcgcc
aaggagccgatctcgctcgaaacgccggttggcgacgaggaagattcacatctgggcgat
ttcatcgaggacaagaacgcgcttctgccaatcgatgcagcgattcaggctaatctgcgc
gatacgacgacccgtgttctggcttcgctgacgccgcgtgaagaacgtgttctgcgtatg
cgtttcggcatcggtatgaacaccgaccacacgctggaagaagtcggccagcagttctcg
gttacccgcgaacgtatccgccagatcgaggccaaggcgctgcgcaagctgaagcatccg
agccgttcgcgtaagctgcgttcgttcctcgatagctag
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