Ochrobactrum sp. MT180101: HGK82_11905
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Entry
HGK82_11905 CDS
T07147
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ocr
Ochrobactrum sp. MT180101
Brite
KEGG Orthology (KO) [BR:
ocr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocr03400
]
HGK82_11905 (addA)
Enzymes [BR:
ocr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HGK82_11905 (addA)
DNA repair and recombination proteins [BR:
ocr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HGK82_11905 (addA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
QOD63466
LinkDB
All DBs
Position
1:2486835..2490377
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AA seq
1180 aa
AA seq
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MKKAPIIPEETLRAQSNAANPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLT
YTKAAAAVMQNRVFMRLSEWAVLPDEELVERLKSLEGRRPNDARLAAARRLFARALETPG
GLKIQTIHAFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDIDLA
AAFADVLQASGEMGLQSLLDEAVSRRNGLQTYIAELGVTAHRSEALHRAFRFDPRTSEDD
LVADLWPIPEFSDDALDLIMSIQKGASRAQDFALQLRRFEKVTSQRDREAVLRAAFLKST
GEPKSGSYVGSAAVKKLLPDFEEDFDAAAARVEQGLDRLKELRLVRLNLAALTLIDNLLQ
RYHDLKRQRGLLDFEDLIIRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQV
IRMLSEEFFSGVGQRNISRTLFAVGDEKQSIYSFQGAVPEDFAAQGRSVSLRAGDAELKF
ERVSLNFSFRSAPDVLQAVDEVFARAEANRGLAGATVHEAIRSDAPGEVEIWDMLTPEVV
EEPDDWREPVDHLAAPAVRLADQIAATIRHWLDRGEPIPGQNRRIMPRDIMVLVRKRDQF
MPALSRALKNLSVPVAGADRLRLTSHIAIQDLMALGRFVLQPSDDLSLASVLKSPLFGWD
DDRLFELAYPRGSSLTLFERLYQVSRGDAALAEVHKTLSRWRNMADTMPVFEFYARILSA
DGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAASPEIKRELDQGRN
EVRIMTVHAAKGLEGAVVFLVDPGSAVWTGSRAPKLIPFDFSNDSPSVKGYLWQPNAGYQ
TGFTTAQIEELKTRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDALATK
AETFVHPVLNVAARRYRNTPRGMVEIAEQDRTEDHALPSFPDEYREPIKPEIGLPRPLAP
SGASALIEADEEPPLDTFSPVLGPGNGTPAFALRRGTAIHMLLQYLPDVPQDGRETLARD
YLGRIAADWPETERQIAWQSVRTILDDATYAPVFAEGSRGEVAIMGTIELGGRDHAVSGQ
IDRISVGEDRVLIVDYKTNRPPPKTIEAVPFAYRAQLALYRELLAPLYPGRIVETALLFT
EGPFLMPLPDVVLDEALQSLKDSQGKVTNQNLTDGSRRAT
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggcacccattatccccgaagaaacgctacgggcacagagcaacgcggcaaat
ccggcggcttctgtctgggtgtccgccaatgcgggttccggcaagacccatgttctgact
gaacgcgttattcgcctgttgctggagggtactgatccttccaagattctctgccttacc
tacaccaaggcggctgcggcggtgatgcagaaccgcgtgttcatgcggctttcagaatgg
gctgtcctgcctgacgaagaactcgtcgaacgtctgaagtcgctggaaggccgcagaccg
aacgatgctcgtcttgcagcagcgcgacggctgttcgcgcgtgcgctcgaaacaccgggc
ggacttaaaatccagaccatccatgctttctgcgaagcgatcctgcaccagttcccgctt
gaggcgaacattgccggtcatttcgagatgatggatgatttgatgcaggcagcccttgtc
ggcgaagcacggcgccaactgctcgaaaccgcgcatggcggcggcgatattgatctcgca
gcggcctttgctgatgttctgcaggcatcgggcgagatggggcttcaatcgcttctggat
gaggccgtaagcaggcgcaatggcctgcagacctatatcgccgaactgggcgtaacggcg
catcgcagcgaagctctgcaccgggctttccgcttcgacccgcgaaccagcgaagatgac
ctcgtcgcagatctctggccgataccggagttttccgacgatgcgctcgacctcatcatg
tcgatccagaaaggcgcgtcgcgcgcgcaggattttgcgctgcagcttcggcgtttcgaa
aaggtgacgagccagcgtgaccgcgaggccgtgttgcgcgcagctttcctgaaaagtacg
ggcgagccgaaatccggttcctatgttggctcggcggcggtcaagaaacttctgccggat
ttcgaagaggattttgacgcggcagccgcgcgtgtcgaacagggtctcgaccggctgaag
gaattgcgtctggtgcggctcaatctggccgcgctgacgctgatcgacaatctgctgcaa
cgctatcacgacctgaagcgtcagcgcggcctgctcgatttcgaggatctcattatccgg
accgtggcgctgctcgcccgcaacggggcagggcagtgggttcagtacaagctcgatcgc
ggcatcgaccatattctggtcgacgaggcgcaagacaccagccccgaccagtggcaggtg
atccgcatgctgtcggaagagtttttctccggcgtcggccaacgcaatatcagccgcacg
ctttttgctgtcggcgatgaaaaacagtcgatctattcgttccagggcgcggtgccggag
gatttcgcggcgcaggggcggtccgtcagtcttcgcgccggagatgcggagctgaaattc
gagcgcgtcagcctcaatttctcgttccgatccgcgcccgacgtcctgcaggctgtagac
gaggtttttgcgagagccgaggccaatcgaggccttgcaggcgcaacggtacatgaagcc
attcgctccgatgcgccgggcgaggtggaaatctgggatatgctgacgccggaagtggtg
gaagagccggacgactggcgcgagccggtcgatcatctggcagcacctgctgtccggctg
gcggatcagatcgcagccactattcgccactggctggatcgcggcgaacctattccgggc
cagaaccggcggatcatgccgcgtgacatcatggttctggtgcgaaagcgcgaccagttc
atgcctgctttgtcgcgggcgctgaaaaacctgtccgttccggtagcaggtgcagaccgc
ttgcggctcaccagccatatcgccattcaagacctgatggcactcggtcgtttcgtgctt
cagccttcggacgatctttcgctggcatcggtattgaaaagcccgttattcggctgggat
gacgaccggctgttcgagcttgcctatccgcgcggttcaagcctcacgctgttcgagcgg
ctttatcaggtctcgcgcggcgatgctgcactggccgaggtgcacaagaccttgagccgc
tggcgcaatatggccgacacgatgccggtgttcgaattctatgcacggatattgagtgcg
gacggtgcgcggcgaaaactactggcgaggttggggccggaggcgggcgatatcatcgac
gaattccagaattatgcgctttccgccgagcgtgccggtctgcccggcctgcaagccttc
cttgaaacgctggaagcggcatcgccggaaatcaagcgtgaactcgatcaggggcgcaat
gaagtgcgcatcatgactgtccatgccgccaaggggctggaaggggcggtggtgtttctt
gttgatccgggaagcgcggtctggactggcagtcgtgcgccaaagctcattccttttgac
ttttcgaatgatagtccgtcggtgaaaggctatctctggcaaccgaatgccggataccag
accggcttcacgaccgctcagatcgaggagctgaaaacgcgggcggaggaagaatatcgc
cgcctgctctatgtcggcatgacgcgtgccgaagaccggctcatcatctgcggctatcgc
ggcacgcgtgaaagcggcgaaacatggcatcgccttgtcgaggatgcgttggccaccaag
gccgagacattcgtgcaccccgtgctgaatgttgccgcaagacgttatcgcaacacaccg
cgcggcatggtcgagattgccgagcaggatagaaccgaagatcatgcactgccatcattt
ccagatgaatatagagagccgataaagccggaaatcggactgccgcgaccgctggcgccg
tccggcgcttctgcgctgatcgaagcggatgaagaaccgccgctcgatacgttttcgccc
gttctgggaccgggcaatgggacgccagcctttgcgttgcgacgcggcacggcgatccat
atgctgctgcaatatctgccggatgtcccacaggatgggcgtgaaacgctggcacgcgac
tatcttgggcggattgctgccgactggccggaaacggagcgccagattgcctggcaaagc
gtcaggaccattctggacgatgccacctatgcaccggtctttgcggaaggctcgcgcggg
gaagttgccatcatgggcacgattgagcttggcgggcgcgatcatgccgtgtccggtcag
atcgaccgcatcagtgttggcgaggatcgtgtcctgatcgtcgactacaagaccaatcga
ccgccaccgaaaaccatcgaggcggttcctttcgcctatcgggcgcagcttgcgctttat
cgcgagttgctggccccgctctatccggggcggattgtcgaaacggcgcttctgttcacc
gaaggtccgtttttgatgccgctgccggatgtggttctggacgaagcgctgcagtctctg
aaagactctcaaggaaaggtgacgaaccagaacttgacggatggcagcagacgcgccaca
tga
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