Ochrobactrum sp. MT180101: HGK82_20855
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Entry
HGK82_20855 CDS
T07147
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ocr
Ochrobactrum sp. MT180101
Pathway
ocr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGK82_20855 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocr03019
]
HGK82_20855 (rnr)
03016 Transfer RNA biogenesis [BR:
ocr03016
]
HGK82_20855 (rnr)
Enzymes [BR:
ocr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HGK82_20855 (rnr)
Messenger RNA biogenesis [BR:
ocr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HGK82_20855 (rnr)
Transfer RNA biogenesis [BR:
ocr03016
]
Prokaryotic type
tRNA degradation factors
HGK82_20855 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QOD65560
LinkDB
All DBs
Position
2:1654053..1656416
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AA seq
787 aa
AA seq
DB search
MARRFSKSDTGRSARTERRAAKAKSADGKSDPNAFLPTREEVLKYIEENPDRAGKRELAK
AFNIKGDARVYLKDLLRELSDEGLVEKRARKLSRPGALPAVTVLDITGRDEDGGLLARPS
EWDEAGYGKPPIVLIRRTRLNKASEGGLAVGVGDRVLAKIFRSEDRDGPDYTARVMKRLE
HRTNAVLGIVRKLGNGEWRLDPVNRKQPEVQLDPAQLENAEAGDLVEVDLISSRRQGLPR
GKVRQVVGSIDSEKALSMIAIHEHEIPHVFPAEALSEAEAAQPATMDGREDWRDIPLLTI
DPADAKDHDDAVYAEPDKDPENPGGQIVIVAIADVAAYVRPDSALDREAQKRGNSVYFPD
RVVPMLPERISNNLCSLRELEDRPALAVRMIFASDGRKKSHKFHRIMMKSAAKLAYSQAQ
AAIDGAPDDKTTPILDGILKPLWDAYAVLKRGRDAREPLELDLPEKKILLTPDGKVDKVI
VPERLDAHKLIEEFMIQANVAAAETLEAHRQPLIFRIHDAPALAKQETLREFLRTLDLSL
AKGAELQPAQFNRILEAVEGSDHQELVNQVVLRTQSQAEYNPDNIGHFGLHLRRYAHFTS
PIRRYADLIVHRALIKALKLGSDGLTTEEETQLEEISALISSTERRAMLAERETVDRLIA
HFLAAHLGDEYEGRVTGVTRAGLFVNLATYGADGLVPISTLGHEYYLYDEANHAIAGERS
GKGFRLGDTVTVRLVEALPVAGALRFEMVSEPHPLPMATRSHHKASRTMRGRRGKPAGIP
RQKRRGR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
ttggcacgccgtttttccaaatccgataccggtcgatccgcacggaccgaacggcgtgca
gccaaagcaaaatctgccgatgggaagagcgatcccaatgcgtttctgccaacccgcgaa
gaggttctcaaatatattgaagagaatcctgaccgggcaggcaagcgcgaactggcaaaa
gcattcaacatcaagggagatgcgcgggtttatctgaaagatcttctacgcgaactttct
gatgaggggttggttgaaaaacgcgcccgcaaactgtctcgccccggcgcattgcctgcc
gtcaccgtgctggatattaccgggcgcgacgaagatggcggtttgctcgcacgtccgtcg
gaatgggacgaagccggttacggcaaaccacctattgtcctgatccgccgcacccggctc
aacaaagcctcagaaggcggcctggcagtcggcgtcggcgaccgcgttctggcaaaaata
ttccgcagtgaagatcgcgacggaccagattataccgcccgcgtcatgaagcgtctcgag
caccgcacgaacgcggtgctgggtattgttcgcaagctcggcaacggtgaatggcggctg
gaccctgtaaaccgaaaacagcctgaggtgcagctcgatccggcacagctggaaaacgct
gaagctggcgatcttgttgaagtggacctgatttcctcgcgtcgtcagggattgccgcgc
ggcaaagttcgacaggtggttgggtctatcgacagcgaaaaagccctgtcgatgattgcc
atccatgagcatgaaattccgcatgttttcccggctgaagcgctgagcgaagcagaagcc
gcccagcctgcgacgatggacggtcgggaagactggcgcgacattccgcttctcaccatt
gatccggctgacgccaaagatcatgacgacgccgtttacgccgagccggataaagacccg
gaaaatccgggtggccagattgttatcgtagcgattgctgacgtcgccgcctatgtccgt
ccagattccgcgcttgatcgtgaagcacagaagcgcggtaactcggtctatttcccggac
agggtcgtgccgatgcttcccgaacggatttcaaacaacctttgttcgcttcgtgagctt
gaagatcgccccgctcttgccgtccgtatgatttttgcttctgacgggcgcaagaagtca
cacaaattccatcgcatcatgatgaaatcggcagctaagcttgcctactcgcaagcccag
gctgccattgacggcgcgccggatgacaagaccacgcccattctcgacggcatactaaaa
ccgctgtgggacgcctatgctgtgctgaagcgtgggcgcgatgcccgcgagccgctggaa
cttgacctgccagaaaagaaaattctgctcacgcccgatggaaaggtagacaaggttatc
gttcctgaacggctcgatgcacacaagctcatcgaagagttcatgattcaggcgaacgtc
gctgccgcagaaacattggaagcgcaccgccagccgttgattttccgcattcacgatgct
ccggctcttgccaaacaggaaaccctgcgtgaattcctgcgtacgcttgatctgagtctt
gccaagggcgcggagctgcagccagcacagttcaaccggattcttgaggccgttgaaggc
tcggatcatcaagaactggtcaatcaggtcgtgctgcgcacgcaaagccaagcggaatat
aaccccgataatatcgggcatttcggcctgcatctgcgccgttatgcgcatttcacctcg
ccgatccgccgctatgccgacctcatcgttcaccgcgctttgatcaaggccctgaaactg
ggaagtgacggactaacgacagaagaagaaacacagctcgaagaaatctccgcactgatt
tcctcgaccgagcgtcgcgccatgctggccgagcgtgaaacagtagaccgcctcatcgcg
cattttctcgccgcacatctcggcgacgaatatgaagggcgcgttacgggcgtcacacgg
gcaggccttttcgtgaaccttgcgacatatggcgcggatgggctggtacccatttcaact
ttaggtcatgaatactatttatatgacgaagcgaaccatgcgattgccggtgaacggagc
ggtaaaggcttccggcttggtgatacagtgacggttcggcttgtagaggcgctccccgtt
gcgggcgcgcttcgctttgagatggtttcggaaccgcatcccctgccgatggcgacccgc
tcgcatcataaggcaagccggacgatgcgtgggcgaaggggtaaacccgcgggtattccg
cgtcagaagagaagaggtcgctga
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