Oceanotoga sp. DSM 15011: OF820_00075
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Entry
OF820_00075 CDS
T08543
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OF820_00075 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocs03019
]
OF820_00075 (rnr)
03016 Transfer RNA biogenesis [BR:
ocs03016
]
OF820_00075 (rnr)
Enzymes [BR:
ocs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OF820_00075 (rnr)
Messenger RNA biogenesis [BR:
ocs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OF820_00075 (rnr)
Transfer RNA biogenesis [BR:
ocs03016
]
Prokaryotic type
tRNA degradation factors
OF820_00075 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
UYP00092
LinkDB
All DBs
Position
16741..18957
Genome browser
AA seq
738 aa
AA seq
DB search
MVDIEKKIIEIIKHKPVILKKIYELLQAENKEDRRLIRKTAKKMLSDGIAYKDSKNKYHL
VSSKQVVGTIEFTKSGNMAFLSDKNGDEIAITVENSLNAMHKDRVLIEKIGQWRDLPSGR
VIRILNNEIERIVGQFQKKKMFGFVIPLNGKINYDFYISPENMNNAKEGEIVEVEILKHK
SKNKNPEGKIIKILGKPGDPSIDLPIIITKHGLPNPGEFPKKVMEEALKIPEKISKKEFK
GRKDFRDQLIFTIDGDTAKDFDDAVGLKKLNNGNYELGVHIADVSHYVNDNSDLNKEAYK
RSTSIYLINTVIPMLPHELSDWICSLVQDEDRLTMSLIMEINKDGDVVKSNIYNGIINSK
KRLTYSKANKILENNADENLMEEIGFLKETLESMKELMYIIRENRKRRGSILDIESGEVY
FEFDENGYVKDILKRERGISEKIIEEFMIKANETVAEFFDIKGLPFIYRVHENPDGEMLI
QLKNYLEILGIKFKIPETMHPKVLQEILEKTKDHPLNESIQKLLVRSMKRAIYSNNNIGH
FGLASNSYTHFTSPIRRYPDLIVHKMLKKYIEGKNDLKKQDIEKYSKILPDISESCSKKE
RVADEAEWDLIDMKKIEYIRKHIGEKYEVFVTGVTKFGLFVEIPEKMINGLIHISELDDY
FIYNERDNSLVGDKTKKTYRVGDKIKAVVAKADKLTLQVDFIPYENYIKINKKNTKNYFN
KKNKNGNKKTFKKKGKNK
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggtagatattgaaaagaaaataatagaaataataaaacataaacctgtaatattgaaa
aaaatttatgaattactacaggcagaaaataaagaagatagaagattgataagaaaaaca
gcaaaaaaaatgttgagtgatggtatagcttataaagattcgaaaaataaatatcatctt
gtttcatcaaaacaagttgtgggcactatagaatttacaaaaagtgggaatatggcattt
ttaagcgacaaaaatggagatgaaatagctataactgttgaaaattcattaaatgccatg
cataaagatagagttttaattgaaaaaattggtcaatggagagacttaccatctggtaga
gttataagaatattgaataatgaaattgaaagaattgttggtcaatttcaaaaaaagaaa
atgtttggctttgtaattcctcttaatggaaaaataaattatgatttttatatatcacct
gaaaatatgaacaatgcaaaagaaggtgaaattgttgaggttgaaatattaaaacataaa
tctaaaaataaaaatccagagggtaaaataataaaaatacttggaaaacctggagatcca
tctatagatttacctataataataacaaagcatggtcttccaaatcctggagaatttcct
aaaaaagttatggaagaagctttgaaaataccagaaaaaatttctaaaaaagaatttaaa
ggaagaaaagattttagagatcaattaatatttacaatagatggagataccgcaaaagat
tttgatgatgcagttggattaaaaaaattaaataatggaaactatgaacttggtgttcat
attgctgatgtatctcattatgtgaatgacaattcggatttgaataaagaagcttataaa
agaagtacaagtatatatctcataaatactgtaattccaatgttacctcatgaactttca
gattggatatgttctctcgttcaagatgaagatagattaactatgtctttaataatggaa
ataaacaaagatggagatgttgtaaaatctaatatatataatggaataataaattcaaaa
aagagattaacctattcaaaagcgaataaaattcttgaaaataatgcagatgaaaattta
atggaagaaataggatttttaaaggaaacattagaaagtatgaaagaattaatgtatata
ataagagaaaatagaaaaagaagaggttcaatacttgatattgaaagtggagaagtctat
tttgaatttgatgaaaatggttatgtaaaagatattttaaaaagagaaagaggtattagt
gaaaaaataattgaagaatttatgataaaagcaaatgaaacagttgcagaattttttgac
ataaaaggtctcccttttatatatagagttcatgaaaatcctgatggagaaatgctaata
caattaaaaaactatttagaaatacttggtataaaatttaaaataccagaaacaatgcat
cctaaagtattacaagaaatattagaaaaaacaaaagatcatccattgaatgaaagtatt
caaaaacttttagttagatctatgaaaagagcaatatactcaaataataatataggccat
tttggattagcgtctaattcttatacacattttacatctccaataagaagatatccagat
ctaatagtacataaaatgttaaaaaaatatatagaaggaaaaaatgacctaaaaaaacaa
gatatagaaaaatattcaaaaatattacccgatatatctgaaagttgttcaaaaaaagaa
agagttgcagatgaagcagaatgggatttaatagatatgaaaaagatagaatatataaga
aagcatataggagaaaaatacgaagtttttgttactggcgttactaaatttgggttattt
gttgaaattccggaaaaaatgataaatggactaattcatatttctgaacttgatgattat
tttatatacaatgaaagagataatagtttagttggagataagactaaaaaaacttataga
gttggagataaaataaaagctgtagttgcaaaagccgataaattaacacttcaagtggat
tttataccttatgagaattatataaaaataaataaaaaaaatactaaaaattatttcaat
aaaaaaaataaaaatggaaataaaaaaacattcaaaaaaaaaggtaagaacaaataa
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