Oceanotoga sp. DSM 15011: OF820_01230
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Entry
OF820_01230 CDS
T08543
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs03030
DNA replication
ocs03430
Mismatch repair
ocs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OF820_01230
03430 Mismatch repair
OF820_01230
03440 Homologous recombination
OF820_01230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocs03032
]
OF820_01230
03400 DNA repair and recombination proteins [BR:
ocs03400
]
OF820_01230
Enzymes [BR:
ocs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OF820_01230
DNA replication proteins [BR:
ocs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OF820_01230
DNA repair and recombination proteins [BR:
ocs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OF820_01230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
RNase_H_2
DEDDh_C
DNA_pol_A_exo1
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UYP00318
LinkDB
All DBs
Position
complement(246045..249929)
Genome browser
AA seq
1294 aa
AA seq
DB search
MQNNINKFFIDNIGFIPFDIKGEIKKVNNGIEDIYEIYIENNKNEAFEIYLKKYLTRMLK
SEVKITPVGNNSVEYFIENWQKLIIGNNLYEYLMLLLPIFDGEKIIFKTFSKYVVTRLKR
EKSTLNSFIARYIGNNINYEFELDDKLKPDSKPMDYYFNEPSNYYNNTVNKISNKKNDII
IIGNNFKKIHTDISSIQSTEGRIAVIKGKVFYKEFNDKNNIVSLYVTDNNDSIVVKHFAS
LGAEINSKVNIGDMLLIEGSIFYDTFIKDFCVKPFNLVKIQEEFKTSEDNNESKRVELHS
HSKLSQMDGIIEVKDLVKKAKKFGHKAIAITDHGAIQSIPQFYDAASSMEIKAIYGLEAN
VVDDFINIININTEDQLIDKCEYVVFDFETTGLQPAVNEIIEIGAVKVKNGEVIEKFHSL
IKPEKSLPPIITKITGIDEDMLKDKNSIEEELPKFLKFIGNSILVAHNADFDYRFLREWI
GKVQNRKYKNTYIDTLSLSKSLMNLSGYSLDKVVKGLNLGNFNHHRADEDAHITALVFLK
LIEMAMSRGVKYLSDFDKLRKFIDYKSLRPMHMTVLVKNRTGLKNLYKLVSNSHIKYFYR
IPRILKSELSNLRDGLLIGSGCENGELCQAFIRGATKDELLETAKFFDYIEIMPIDSLEI
REEFSDERAIEMYKMIYEVARELDIPAVMTGNVHYLEKHERKFRTALKVADKKRYYKSNR
YFRTTDEMLDATFKIFNNKSICEELVIKNSNLIADSIEEIQPLKKKLNPPNIENAENQVR
ELTMNKAYEMYGEKLPEIVMKRLERELNSIIKHGYSVLYLMAQKIVKKSNDDGYLVGSRG
SVGSSLVATMMGITEVNPLPPHYYCPKCKKSIFFTDGKYGSGYDLPDKKCEDCNIMMKKN
GQDIPFETFMGFEGDKIPDIDLNFSGEYQARAHKYVEEMFGTGHVFKAGTISTVAERTAF
EYARKYSEKYSEVTGKTLRNCEMQRIANAITGVKRTTGQHPGGLMIVPKEFEIFDFTPIQ
FPANDTKSDVKTTHFDYHVIHDDLVKLDALGHDDPTFIRMLTDLTGISPFDIPMDDKKTM
SIFSSTQTLNIDLKNELNTTVGSLGIPEFGTNFVRRMLEDTRPKTFAELVRISGLSHGTD
VWSGNAKNYIDDGIATLNDVIACRDDIMNYLILKGADPKKSFFIMEKVRKGKGLTPEDEE
LMKNVKVPEWFLNSCKKIKYLFPKAHAAAYVSMAFRIAWFKVHKPLAFYATYFSVKGDEF
NLEVIIKGKDSIKRRLMELRSMELDVKKKMKELF
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaataatataaataaattttttatagataatataggttttattccttttgatata
aagggagaaatcaaaaaagttaataatggtatagaagatatttatgaaatatatatagaa
aataataaaaatgaagcttttgaaatatatttaaaaaaatatttaacacgtatgctaaaa
tcagaagtaaagattactcccgtgggtaataattctgttgaatattttatagaaaattgg
caaaaattgataattggtaataatctatatgaatatttgatgctattacttcctatattt
gatggagaaaaaataatttttaaaacattttcaaaatatgttgtgacaagattaaaaaga
gaaaaatcaactttaaattcttttatcgcaagatacataggtaataatataaattatgaa
tttgaacttgatgataaattaaaaccagattccaaacctatggattattactttaatgaa
ccatcaaattattataataatacagtcaataaaatatctaataaaaaaaatgatatcata
ataattggaaataattttaaaaaaattcatacagatataagtagcattcaatcaacagag
ggaagaattgcagtaataaaagggaaagttttttataaagaatttaatgataaaaataat
atagtttctttatatgttactgataataatgattctatagtagtaaaacattttgcttct
ttaggagcagaaataaattcaaaagtaaatattggagatatgttattgattgaaggaagt
atattctatgatacttttataaaagatttttgtgtaaaaccttttaatcttgttaaaatt
caagaagagttcaaaacttctgaagataataatgaaagtaaaagagtagaattacattct
cattctaagctttctcaaatggatgggataatagaagttaaagatttagtgaaaaaagca
aaaaaatttggtcataaggctatagcaataactgatcatggtgctatacaaagtatccct
caattttatgatgcagcttcttcaatggaaattaaagcaatttatggattagaagctaat
gtcgtagatgattttataaatattataaatataaacactgaagatcaattaatagataaa
tgtgaatatgttgtttttgattttgaaacaactggacttcaaccagctgtaaatgaaata
attgaaataggagctgtaaaagtaaaaaatggtgaagttattgagaaatttcattcatta
ataaaaccagaaaaatctcttccaccaataataactaaaataactggaatagatgaagat
atgttaaaagataaaaacagtatagaagaagaattaccaaaattcttgaaattcataggt
aattccattttggtagctcataatgctgactttgattatagatttttaagagaatggatt
ggaaaagttcaaaatagaaagtataaaaatacttatatagatactttatcactttcaaaa
tctttaatgaaccttagtggttattctctcgataaagttgtaaaaggtcttaatctcggc
aattttaatcatcatagagctgatgaagatgctcatataacagctttagtatttttaaaa
ttaatagaaatggctatgtcaagaggagttaaatatttatccgacttcgataaactaaga
aaatttatagattataaaagtttaagacctatgcatatgactgttttggtaaaaaataga
acaggtcttaaaaatctttataagcttgtctcaaattcacatataaaatatttttataga
attccaagaatattaaaaagtgaattatctaatctaagagatggattattgataggatca
ggttgtgaaaacggtgaactttgtcaagcttttattcgtggtgcaacaaaagatgaatta
ttagaaactgcaaaattttttgattatatcgaaataatgccaatagattctcttgaaatc
agagaagaattctctgatgaaagagccattgaaatgtataaaatgatatatgaagtcgca
agagaactcgatattccagcagtaatgactggtaatgttcattatcttgaaaaacatgaa
agaaagtttagaactgctttaaaagtcgcagataaaaagagatattataaatctaataga
tattttagaacaacagatgaaatgcttgatgcaacttttaaaatatttaataataaatca
atatgcgaagaattagttataaaaaatagcaatctaatagcagattctatagaagaaatt
caacctttaaagaaaaaattaaatcctcctaatattgaaaatgctgaaaaccaagttaga
gaattgactatgaataaagcttatgaaatgtatggtgaaaaattgcctgaaatagttatg
aaaagacttgaaagagaattaaactccataattaaacatggttattctgttttatattta
atggctcaaaaaatagtaaaaaaatctaatgatgatggttatcttgttggttcaagaggt
tctgttggaagttctcttgtagcaactatgatgggtataacagaagttaatcctttacca
cctcattattattgtccaaaatgtaaaaaaagcatcttttttacagatggaaaatatggt
tctggatatgatttgccagataaaaaatgtgaagattgtaatattatgatgaaaaaaaat
ggacaggacattccttttgaaacttttatgggatttgaaggagataaaatccctgatata
gatttgaatttttctggagaatatcaagcaagagcacataaatacgttgaagaaatgttt
ggaacggggcatgtttttaaagcaggaactatatcaacagtagctgaaagaactgctttt
gaatatgcaagaaaatattcagaaaaatactccgaagtaactggaaaaactcttagaaac
tgtgaaatgcaaagaatagctaatgcaataacaggtgtaaaaagaactacaggtcaacat
cctggtggtttgatgatagttccaaaagaatttgaaatttttgattttacacctatacag
tttccagctaatgatacaaaatcagatgttaaaactacacattttgattatcatgtaata
catgatgatctcgtaaaacttgatgcattaggacatgatgatccaacatttataagaatg
ttgactgatctgacaggaatatctccatttgatattccaatggatgataaaaaaactatg
agtatattctcatcaactcaaaccttaaatatagatttaaaaaacgaattaaatacgact
gttggttctcttggaatccctgaatttggaacaaattttgttcgaagaatgcttgaagac
actagaccaaaaacattcgctgaactcgttagaatctcagggttatcacatggtactgat
gtttggtcaggaaatgcaaaaaattatatagatgatggaattgcaactttaaatgatgta
atagcttgtagagacgatataatgaattatttaatattaaaaggtgcagatccaaagaaa
tctttcttcataatggaaaaagttagaaaaggaaaaggtttaacccccgaagatgaagaa
cttatgaaaaatgtaaaagtacccgaatggtttttaaattcttgtaaaaaaatcaaatat
ttgtttcctaaagcacatgctgctgcttatgtttctatggcttttagaattgcttggttt
aaagtacacaaacctttagcattttatgcaacttattttagtgtaaaaggtgatgaattt
aatcttgaagtaataataaaaggaaaggattctataaaaagaagattaatggaacttaga
agtatggaattagatgtaaagaaaaaaatgaaagaactgttttag
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