Oceanotoga sp. DSM 15011: OF820_01675
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Entry
OF820_01675 CDS
T08543
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ocs
Oceanotoga sp. DSM 15011
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocs03032
]
OF820_01675 (topA)
03400 DNA repair and recombination proteins [BR:
ocs03400
]
OF820_01675 (topA)
Enzymes [BR:
ocs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OF820_01675 (topA)
DNA replication proteins [BR:
ocs03032
]
Prokaryotic type
DNA Topoisomerases
OF820_01675 (topA)
DNA repair and recombination proteins [BR:
ocs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OF820_01675 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DNA_ligase_ZBD
Toprim_C_rpt
CoiA_N
Ribosomal_S27e
zinc_ribbon_6
Zn_ribbon_6
HypA
Trm112p
PF3D7_0210200_HH
Lar_restr_allev
GFA
Motif
Other DBs
NCBI-ProteinID:
UYP00401
LinkDB
All DBs
Position
complement(338156..340405)
Genome browser
AA seq
749 aa
AA seq
DB search
MSKNSKYIVIVESPAKAKTIERYLGKDFEVIASKGHIRDLPKKKFGVNIENNFEPEFETM
SGKEKVIKEIKSKVKNKKILLASDMDREGEAIAWHLSQILGLDPKEKNRIIFTEITKNSI
NDSIKKPLQISLNKVDAQIARRILDRIVGYKVSPLVWKVFKNYKTSAGRVQSAALKLIVD
KERKIFQFKSKKYFKIYLEKDNIKIPLVKENGKKIKNEKIDQEKKDLILDYLKDKDIKLF
NKKTKDSLRKSPDPFITSTLQQSAVSILGWSSKKTMQIAQKLYEGIETNDGNLAFITYMR
TDSKRVSDIAQNAAKKFIEENYGKEYTSKYKEKKSKNKTQDAHEAIRPTDINMTPEKAKK
ILSGDTIKLYKMIWERFMASQTSNAKYIETKYELSDQEKKYTFELISKEKIFEGFEIFWS
HNNKEIIYKLKDDIVFKGKDVKNEEKETMPPPRYSEASIVKELESNGIGRPSTYSTIIST
LITRKYINKIEKNILRPTVAGFIVTDFLENNFPDIINTNFTANMEEDLDKIEEGLNNSKI
VLKTFYSSFENFLNDASEKIKNFELKLNYESDVKCEDCNENMKLQFGRYGMYLQCEKCEK
TQKVPFYMYGITLKEKLYIKDYIEDISSENNEIGEKCPNCGSELVLKRGRFGEFIACSNY
PECKYTKSVPARGKCPKCNSEVSKLKSKKGKLYFKCTNKDCGEMFWNEPSNYKDPETNQT
LFYYYKNKEEKLYNPETKTFYDIEEIKKK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaattcaaaatatattgtaatagttgaatcacctgcaaaagctaaaacaata
gaaagatatttgggaaaagattttgaagttatagcttcaaaagggcatataagagattta
ccaaagaaaaaatttggtgtaaacatagaaaataattttgaacctgaatttgaaacaatg
agtggaaaagaaaaggttataaaagagataaaatctaaagtcaaaaacaaaaaaatttta
cttgcttcagatatggatagagaaggtgaagcaattgcttggcatttatctcaaatatta
ggattagatcctaaagaaaaaaacagaattatatttactgaaataacaaaaaattctata
aatgattccataaaaaaacctctacaaatatctttaaacaaggttgatgctcaaattgcg
agaagaatcttagatagaatagtaggttacaaagttagtccattagtatggaaagtattt
aaaaattataaaacaagtgctggtagagttcaatcggctgctttaaaacttatagtagat
aaagaaagaaaaatttttcaatttaaatcaaaaaaatattttaaaatatatttagaaaaa
gataatataaaaattcctttagtgaaagaaaatgggaaaaaaattaaaaatgaaaaaata
gatcaagagaaaaaagatttaatattagattatctaaaagataaagatataaaattattt
aataaaaaaactaaagatagtcttagaaaatcacctgatccttttataacttcaacttta
caacaatctgcagtttcaattttaggttggtcatcaaaaaaaactatgcaaatagctcaa
aaactttatgaaggaatagaaacgaatgatggtaatttggctttcataacttatatgaga
acagattcaaaaagagtttctgatatcgcacaaaatgcagctaaaaaattcattgaagaa
aattatggtaaagaatatacaagtaaatataaagaaaaaaaatcaaaaaataaaacacaa
gatgctcatgaagctataagacctactgatataaatatgaccccagaaaaagcaaaaaaa
atattatctggagatactataaaattatataaaatgatttgggaaagattcatggcctct
caaacatcaaatgcaaaatatatagaaacaaaatatgagttatcagatcaagaaaaaaaa
tatacatttgaattgatatcaaaagaaaaaatatttgaaggatttgaaatattttggagt
cataataataaagaaattatatataagttaaaagatgatattgtttttaagggtaaagat
gtaaaaaatgaagaaaaagaaaccatgccacctccaagatattccgaagcttctatagta
aaagaattagaatctaatggaattggaagaccttcaacatactcaactataatttcgaca
ttaataacaagaaaatatataaacaaaattgaaaaaaatatcttaaggcctactgttgct
ggattcatagttacagattttttagaaaacaattttccagatattatcaatacaaatttt
acagcaaacatggaagaagatttagataaaatagaagaaggattaaataattcaaaaata
gtattaaaaactttttattcatcttttgaaaattttttaaatgatgcaagtgaaaaaata
aaaaattttgaattaaaactaaattatgaatcagatgtaaaatgtgaagactgtaatgaa
aatatgaaattacagtttggaagatatggcatgtaccttcaatgtgaaaaatgcgaaaaa
actcaaaaagttccattttatatgtatggaattactttaaaagaaaaattatatataaag
gattatattgaagatatttcatcagaaaataatgaaattggagaaaaatgtcctaattgt
ggttcagaacttgtacttaaaagaggtagatttggagaatttattgcatgttcaaattat
ccagaatgtaaatatacaaaaagtgttccagcaagaggaaaatgtccaaaatgtaactcg
gaagtttcaaaattaaaaagtaaaaaaggtaaattatactttaaatgtactaataaagac
tgtggagaaatgttttggaatgagccttcaaattataaagatccagaaacaaatcaaact
ttattttattattataaaaacaaagaagaaaaattatataacccagaaacaaaaacattt
tatgatattgaggagataaagaaaaaatga
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