Oceanotoga sp. DSM 15011: OF820_01900
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Entry
OF820_01900 CDS
T08543
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs02020
Two-component system
ocs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OF820_01900
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OF820_01900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocs03021
]
OF820_01900
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ocs02035
]
OF820_01900
Transcription machinery [BR:
ocs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OF820_01900
Bacterial motility proteins [BR:
ocs02035
]
Flagellar system
Flagellar assembly proteins
Stator
OF820_01900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
HTH_23
HTH_3
GerE
HTH_28
Sigma70_ECF
RPN6_N
HTH_38
HTH_Tnp_4
UPF0122
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UYP00445
LinkDB
All DBs
Position
380085..380774
Genome browser
AA seq
229 aa
AA seq
DB search
MNYRLDKDQVVKNFLPKIKVIALNLMTNLPKSVELDDLIQEGVIGLLQSYERYDPKHGAT
FYTYAMTRIRGAMLDYLRKIDWLPKEVRHLVKKYEEFLVNNSDSFYSDEEIQEKLNISKE
ELNKIKFSIKKSQILDLDMYILNHGEESIDLEKNDENDPEIIAYKEILKDELEENIKKLK
EKEQLILSLYYEKGLTFKEIGEIIGVSESRISQIHSSIIIKLKTSIKRG
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgaattatagattggataaagaccaagttgtaaaaaatttcttaccgaaaataaaagtt
atagccttaaatttaatgacaaatcttccaaaaagtgttgaattagatgatttaattcaa
gaaggagtaattggtttattgcaatcatatgaaagatatgaccctaaacatggtgcaact
ttttatacttatgctatgacaagaattagaggggctatgttggattatctgagaaaaata
gattggctaccaaaagaagtaaggcatttagtaaaaaaatatgaagaatttttagttaat
aattctgattctttttatagtgatgaagaaatacaagaaaaacttaatataagcaaagaa
gaattgaataaaataaaattttcaataaaaaaaagccaaatattagatcttgatatgtat
atattaaatcatggagaagaatctatagacttagaaaagaatgatgaaaatgatccggaa
ataatagcttataaagaaatacttaaagatgaattagaagaaaatataaaaaaattaaaa
gaaaaagaacaattaattttgtcattatactacgaaaaagggcttacttttaaagaaatt
ggtgaaataattggagttagcgaatcaagaatatcacaaatacattcatctataataatt
aaattaaaaacctcaataaaaagagggtga
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