Oceanotoga sp. DSM 15011: OF820_04975
Help
Entry
OF820_04975 CDS
T08543
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ocs
Oceanotoga sp. DSM 15011
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocs03016
]
OF820_04975 (thpR)
Enzymes [BR:
ocs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
OF820_04975 (thpR)
Transfer RNA biogenesis [BR:
ocs03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
OF820_04975 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
DUF2520
Motif
Other DBs
NCBI-ProteinID:
UYP01039
LinkDB
All DBs
Position
1009578..1010165
Genome browser
AA seq
195 aa
AA seq
DB search
MMENRNSIRTFIAIESNEEQRNLLTDSILKLDRMGFKSNWTKRENIHLTLFFLGNLNMSL
IAKLAYKIGERISGFPTFVYTTRGIGYFSFENEPKSIWFGVEEEQILKGLYSEIKKSLLL
LNINVKDEKFVPHITLGRVKKYPEHWDTLIKSISFEPIQIPVNSVGIFSSTLTKTGPVYK
KLYSIDFEGGVIING
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaatagaaattcaataagaacttttattgctatagagtctaatgaagaacaa
agaaatcttttaactgatagcatattaaaactcgatagaatgggttttaaatcaaattgg
actaagagagaaaatatacatctaactttattttttcttggtaatttaaatatgtcttta
atagcaaaattagcttataaaataggcgaaagaatttcaggcttcccaacttttgtttac
accacgagaggaataggctacttttcttttgagaatgaaccaaaaagcatatggttcgga
gtagaagaagaacaaattctaaaaggtctttattcagaaataaagaaatctttattactt
ttaaatattaatgttaaagacgaaaagtttgttccacatataactttgggaagggtcaaa
aaataccccgaacattgggatactcttataaaatctataagctttgaaccaatacagata
cctgtaaactctgtaggaattttttcatccacactaacaaaaacaggtcctgtatataaa
aagctttacagtattgactttgaaggaggcgtaataataaatggctaa
DBGET
integrated database retrieval system
