Oceanotoga sp. DSM 15011: OF820_11725
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Entry
OF820_11725 CDS
T08543
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OF820_11725 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocs03021
]
OF820_11725 (rpoD)
Transcription machinery [BR:
ocs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OF820_11725 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r1_1
GTP_EFTU
T2SSG
DUF7769
Motif
Other DBs
NCBI-ProteinID:
UYP01445
LinkDB
All DBs
Position
2479180..2480298
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AA seq
372 aa
AA seq
DB search
MKNVDSIIKLLIRSAKKKENVLTYSDIDEALPAEASDEIDSNFIEKIYASLEEEGITILE
ENEEEQEDDDEDIEDEEVIEILEDVEMKMYDNISLGDPIKIYLKEISKVNLLTPARERQL
ARRAQKQDKRARDELIKANLRLVISIAKRYTGRGLSFLDLIQEGNIGLIKAVNKFDWKKG
FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKMNKTIREYLQENGEYPTAQELS
KLMDKPVEKVNEILMSAKDIISLNSPISSGNGDDDESETGDFIGSDDLTPEEVAQQMILK
EKLEEVLDTLHPKEALVLKMRYGFLDGKQKTLEEVGQFFNVTRERIRQIETKALRKLRHP
SRSSQLKDIVDG
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
ataaaaaatgtagatagtatcataaagttattgattagaagtgccaagaaaaaagaaaat
gttttaacttactctgacattgatgaagctttacccgcagaagcatctgatgaaatagac
agcaattttatagaaaagatttatgcatcgcttgaagaagaaggaattacaattttagaa
gaaaatgaagaagaacaagaagatgatgatgaagatatagaagatgaagaagttatagaa
atacttgaagatgtagaaatgaaaatgtatgataatatatctcttggggaccctataaaa
atatatttaaaagaaatatctaaagttaatttattaaccccagcaagggaaagacaattg
gcaagaagggcacaaaaacaagacaaaagagcaagagatgaattgataaaagcaaattta
agacttgtaataagtatagcgaaaagatatacgggaagaggattgagttttttagattta
attcaagaaggaaatataggactgataaaagcagtaaataaatttgattggaaaaaagga
tttaaattttctacatatgcaacttggtggataagacaagcaataacaagagcaatagca
gatcaggcaagaactataagaatacctgtgcatatggttgaaactataaataaaatgaat
aaaactataagagaatatttacaagaaaatggagagtatccaactgcacaagaattatct
aaactcatggataaaccagttgaaaaagttaatgaaatacttatgagtgctaaagatata
atatctttgaattcaccaatttcaagtggaaatggtgatgatgatgaatcagaaacagga
gattttataggttctgatgatttaactccagaagaagttgctcaacaaatgatattaaaa
gaaaaacttgaagaagtactcgatacccttcatccaaaagaagcacttgtattaaaaatg
agatatggttttttagatggaaaacaaaaaactttagaagaagttggacaattttttaat
gtcacgagagaaagaattagacaaatagaaacgaaagcattaagaaaattgagacatcca
agcagaagttcacaattgaaagatatagtagatggttaa
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