Oceanotoga sp. DSM 15011: OF820_12415
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Entry
OF820_12415 CDS
T08543
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs03420
Nucleotide excision repair
ocs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OF820_12415
03430 Mismatch repair
OF820_12415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocs03400
]
OF820_12415
Enzymes [BR:
ocs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF820_12415
DNA repair and recombination proteins [BR:
ocs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OF820_12415
MMR (mismatch excision repair)
Other MMR factors
OF820_12415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_11
AAA_12
DEAD
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYO99842
LinkDB
All DBs
Position
2618034..2620001
Genome browser
AA seq
655 aa
AA seq
DB search
MLENEGVFEIQPKIPAFFKEELDEEQYESVIKSNGKSLIIAGPGSGKTRVITYKIAYLIY
NDIKPENILLLTFTRAAAKQMIERVKNVTNMELNGMMAGTFHHFCNYILRVYASKIGFNN
NFTILDSEDSKDLMKIARNEYCEKLGDYAKKIPKENVILKIISYSSNTLKSLRESILEIS
SFLIEYENDIEQIWIKYQELKKEINAMDYDDLLINTAMLLKSDKELLKYISKRYRYVLVD
EFQDTNKIQLEIVEALSDYHKNLIAVGDDSQSIYSFRGARFENIKDFMDEKNVKLFKIQT
NYRSTPEIVNLINDMIPTSSVKKHLNAKRKPYLKPTIIETFDDLEQSEAVIKIIDEKIEE
GIEYNDIAILYRSHALSMSLQQKLDSKLIPYKLLSGKRFIETRHIKDILSFLKILYNPYD
KISWIRVMKLFPGIGTKTAVRNYESIISNLSEGINILDIFDKLSNKKTKDIYELLTKIYK
KRDDKPQNLINEIYENFYKEYSNLNYKNSRSRNMDIERFSEISSKYENTGKFLEDMTLSE
NIEVRPSDKNDKKDEITLTTVHGSKGLEWKVVIIISANPGDFPNGMAIKEKNLDEEERLF
YVAITRAKDELYILKQTTGSTNPYLRNSFVFIKSENDFIKKISEDKVNKMRVGYL
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaaacgaaggagtttttgaaattcagccaaaaattcctgcatttttcaaagaa
gaattagatgaagaacaatatgaatcagttatcaaatcaaatggaaaatcattgattatt
gcaggtcctgggtcaggaaaaacaagagttataacttataaaatagcttatttaatttat
aatgatataaaaccagaaaatatacttcttttaacttttacaagagctgctgcaaaacaa
atgatagaaagagtaaaaaatgttactaatatggaattaaatggtatgatggctggaact
tttcatcatttttgtaattatatcttaagagtatatgcatctaaaattggttttaacaat
aattttacaatacttgatagtgaagattcaaaagatctaatgaaaattgcaagaaatgaa
tactgtgaaaaattaggcgattatgcaaaaaaaatacctaaagaaaatgtaatattgaaa
ataataagttattcttctaacacattaaaatctttaagagaatctatattagagatatct
tcttttttaatagaatatgaaaatgatattgaacaaatatggataaaatatcaagaatta
aaaaaagaaataaatgctatggactatgatgatctattgataaatacagctatgctttta
aaatctgataaagaacttttaaaatatatatctaaaagatatagatatgtccttgtagat
gaatttcaagatactaataaaatacaacttgaaatagtagaagcgctttctgattatcat
aaaaatttaatagctgttggagatgattcgcaaagtatatattcttttagaggtgcaaga
tttgaaaatataaaagattttatggatgaaaaaaatgtaaaactttttaaaattcagaca
aattatagatctacgcctgaaatagtaaatcttataaatgatatgattccaacatcatct
gtaaaaaaacatttaaatgctaaaaggaaaccttatttaaaacctaccataatagaaact
tttgatgatcttgaacaatcagaagccgttataaagataatagatgaaaaaatagaagag
ggaatagaatataatgatatagctatactttatagatcacatgctctatctatgtcatta
caacaaaaattagattcgaagttaatcccatataaattattatcagggaaacgctttata
gaaacaagacatattaaagatattttatcttttttaaaaatactttataatccttatgat
aagatttcttggataagagtgatgaaactttttcctggaataggtacaaaaacggcagtt
agaaattatgaaagtataatttctaatctttcagaaggaataaatattttagatatattt
gataaactttcaaataaaaaaacaaaagatatatacgaattacttacaaaaatatataaa
aaaagagatgataaacctcaaaatttaataaacgaaatatatgaaaatttttataaagaa
tattcaaatttaaattataaaaattcaagatccagaaatatggatatagaaaggttttct
gaaatttcaagtaaatatgaaaatactggaaaatttcttgaagatatgactttaagtgaa
aatatagaagttagaccttcagataaaaatgataaaaaagatgaaataactttaacaaca
gttcatggctcaaaaggacttgaatggaaagtagtaataataatttcggcaaatccagga
gattttccaaatggtatggcaataaaagaaaaaaatttagatgaagaagaaagattgttt
tatgttgcgataacgagggcaaaagatgaattatatatattaaaacaaacaacgggttca
actaacccatatttaagaaattcttttgtatttataaaaagtgaaaatgatttcataaaa
aagatttcagaagataaagttaataaaatgagagttggatatttataa
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