Oceanotoga sp. DSM 15011: OF820_12595
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Entry
OF820_12595 CDS
T08543
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OF820_12595 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocs03021
]
OF820_12595 (rho)
03019 Messenger RNA biogenesis [BR:
ocs03019
]
OF820_12595 (rho)
Transcription machinery [BR:
ocs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OF820_12595 (rho)
Messenger RNA biogenesis [BR:
ocs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OF820_12595 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
Spore_III_AA
NACHT
Fungal_virus_P2_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UYP01449
LinkDB
All DBs
Position
2640010..2641266
Genome browser
AA seq
418 aa
AA seq
DB search
MAKLNEMNRKDLYDFARKLQINNYSKMTKNELMFSILRKQTESIGYFFYEGVLEVLPDGY
GFLRNVDNSLLQGPDDVYVSQSQIRRFNLFTGDVVAGQVRPPKEGEKFFALLRIEAINYQ
EPEKAKDRVSFENLTPEYPTKKMTLEYEKGPLSSRIVDMFSPIGFGQRGLIVSPPKAGKT
TLLKDIANSIAKNHPETKRYVLLIDERPEEVTDIKDTVNANIIAAPFDMDPKNQIKVSEM
TLNLVKRQVEFGHDVVILMDSLTRFARAYNLYVPSSGKLLSGGVDPAALTFPKKFFGAAR
KIREGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELILSRDIANERIFPAINIKQSGT
RKEELLLNEEEMSNIFILRKLISDIGNKDSIEFIIKRLKEYESNKKIFEAINDKKFYG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattaaatgaaatgaatagaaaagatttatatgattttgctagaaaattacag
attaataattattcaaaaatgactaaaaatgaattaatgttttctattcttagaaaacaa
actgaatcaataggatattttttctatgaaggagtacttgaagttttacctgatgggtat
ggatttttaagaaatgttgataattcattattacaaggacctgatgatgtttatgtatct
caatctcaaataagaagattcaacttatttacaggagatgttgttgcgggtcaagtaaga
cctccaaaagagggagaaaaattctttgctttattgagaatagaagcgataaattatcaa
gaacctgaaaaagcaaaagatagagtatcatttgaaaatctaacacctgaatatcccaca
aaaaaaatgactttagaatatgaaaaaggacctttaagttcaagaatagttgatatgttc
tctcctataggcttcggacaaagaggattaatagtttccccaccaaaggcaggaaaaact
acacttttaaaagatatagcgaattcaatagcaaaaaatcaccccgaaacaaaaagatat
gttttacttatagatgaaaggccagaagaagttaccgatataaaagatactgtaaatgct
aatataatagcagcaccattcgatatggatccaaaaaatcaaattaaagtttcagaaatg
actttaaatcttgttaaaagacaagttgaatttggacatgatgtagtaatattaatggat
agcttaacaagatttgcaagagcgtataatttatatgttccttcaagtggaaaacttcta
agcggtggagtagatccagcagctttaactttcccaaaaaaattttttggtgcagcaaga
aaaataagagaaggtggaagtttaacaataattgcaacagcacttgtagatacaggatct
aaaatggatgaagtaatatttgaagaatttaaaggaacaggtaatatggaacttatatta
tcaagagatattgctaatgaaagaattttccctgctataaatattaaacaatctggtacg
agaaaagaagaactattactcaatgaagaagaaatgagtaatattttcatattgagaaaa
ttaatatctgatataggaaataaagattccatagaatttataataaaaaggttaaaagaa
tatgaaagtaataaaaaaatctttgaagctataaatgataaaaaattttatggataa
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