Oceanotoga sp. DSM 15011: OF820_13230
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Entry
OF820_13230 CDS
T08543
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OF820_13230 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocs03400
]
OF820_13230 (uvrA)
DNA repair and recombination proteins [BR:
ocs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OF820_13230 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OF820_13230 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_21
nSTAND1
nSTAND3
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_25
Viral_helicase1
ATPase
AAA_33
SLFN-g3_helicase
cobW
HypA
AAA_7
UPF0547
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UYO99994
LinkDB
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Position
2759734..2762553
Genome browser
AA seq
939 aa
AA seq
DB search
MSKYINIKGAREHNLKDVDVKIPKNKLVVISGLSGSGKSTLALDTIYAEGQRRYLESVSS
YARQFLGDLKKPDVEMIEGLSPAIAIEQKSVSNNPRSTVGTITEIYDYIRVLYARIGKAY
CPDCGIELKSSTVDEIVDNIYKNFEPESRLYIFSPIAKEKKGEFKKEINSMKVSGFRKAE
IDGEILDLEDIVSLPKNVRHNINLLIDRIKLRDENFERVYEAVEMALRESNGFVQIREMD
KKEKTLKIKNFSEMLACPECGYSFPEVNPKLFSFNSPYGACEDCHGLGFKLEVQPEYIFD
YEKSLDEGATLNMGKDTYMVKIMKGVVKALGEDPNKKLKDLPKKITDSLLYGTEKKVEVI
LEREDSSYNFNRKFEGMVNWYARRYLETDSKDIREWIERNFMVQNTCNTCNGHRLRKEAL
NVKINDLNISELTTLSIEKVDEFFKDLKVSKFEYQIVEELLREIKKRLGFLIDVGLGYIG
LSRTSNTLSGGESQRVRLATQIGSGLTGVTYVLDEPTIGLHSRDNDRLIDTLKKLQKLDN
TVIIVEHDEEVIRASDYIIDLGPGAGINGGNIMYQGTTKNLLNKPEKSLTGLYLTGKKRI
EFIDKKREKNNKFLELKGATHNNLKNIDLKIPLGKMVVVTGVSGSGKSSLIMDTLYPALQ
KEIYNSRVIPGNFKELKGLKNIDKVISIDQSPIGRTPRSNPATYTGVFDLIRDIFSATPE
SKIRGYNKGRFSFNVKGGRCEACRGHGVLKIEMQFLPDVYVTCDVCKGKRYNKETLKVKY
RDKNISDILDMSVEEGAEFFKNINAIGSILELLKDVGLGYIKLGQPATTLSGGEAQRIKL
TSELRKRSTGKTVYILDEPTTGLHFEDVRKLIGVLNLLVEKGNTVIIIEHNMDVIKNADH
IIDIGPEGGIEGGYIVGEGTPLEISKLNTYTAKYLKKYI
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatatataaatataaaaggtgcaagagaacataatttaaaagatgttgatgtt
aaaataccaaaaaataaacttgttgttataagtggcctttctggttctggaaaatctaca
cttgctttagatactatatatgctgaagggcaaagaagatatcttgaatcagtttcttca
tatgcaaggcaatttttaggagatttaaaaaaaccagatgttgaaatgatagaaggtctt
tctccagctatagcaattgaacaaaaatctgtcagtaataatccaagatccactgttgga
actataacagaaatatatgattatataagagttttatatgcaagaataggaaaagcttat
tgtccagattgtggtatagaattaaaaagttcaacagtggatgaaatagttgataatatc
tataaaaactttgaaccagagtcaagattatatatattttcacctattgctaaagaaaaa
aaaggagaatttaaaaaagaaattaatagtatgaaagtgtctggatttagaaaagctgaa
atagatggagaaattctagatttagaagatattgtatcattacctaaaaatgtgagacat
aatataaatttactcatagatagaataaaacttagagatgaaaattttgaaagagtttat
gaagctgttgaaatggcattaagagaatctaacggatttgttcaaataagagaaatggat
aaaaaagaaaaaacattaaaaattaaaaacttttctgaaatgcttgcctgtccagaatgt
ggttattcatttccagaagtaaatcccaaattattttcatttaatagtccatatggcgct
tgtgaagactgtcatgggcttggatttaaacttgaagtacagccagaatatatttttgac
tatgaaaaatctttagatgaaggtgctactcttaatatgggaaaagatacctatatggta
aaaataatgaaaggagtagtaaaagctttaggcgaagatccaaataaaaaattaaaagat
ttaccaaaaaaaataacagatagccttttatatggaactgaaaaaaaagtagaagttata
cttgaaagagaagattctagctataattttaatagaaaatttgaaggtatggtaaattgg
tatgctaggagatatttagaaactgattcaaaagatataagagaatggattgaaagaaat
tttatggttcaaaatacatgtaatacatgtaatggacatagattgagaaaagaagcttta
aatgtcaaaataaatgatttaaatatttctgaacttactaccttatccattgaaaaagtg
gatgaattttttaaggatttaaaagtttcaaaatttgagtatcaaatagttgaagaactt
ttgagagaaataaaaaaaagattgggttttttaattgatgttggattgggctatataggt
ctttcaagaacatcaaatactctttctggtggagagtcacaacgtgttagattggcgaca
caaataggttctggattaacaggagttacttatgttcttgatgagccaactataggtctt
cattcaagagataatgatagacttatagatactttaaagaaacttcaaaaacttgataat
actgtgatcattgttgaacatgatgaagaggttataagagcttctgattacattatagat
cttggaccaggtgcaggaataaatggtggtaatataatgtatcaaggcactacaaaaaat
ttacttaataaaccagaaaaatctcttacaggtttatatttaacaggtaaaaaaagaata
gaatttatagataaaaaaagagaaaaaaataataaatttttggaattgaaaggtgcgact
cataacaatttaaaaaatatagacttgaaaatacctttggggaaaatggtagttgtaact
ggtgtatctggatcgggaaagtcttcattaataatggatactctttatccagcattacaa
aaagaaatctataattcgagagttataccaggtaattttaaagaattaaagggcttaaaa
aatatagataaagttatttctatagatcaaagtccgataggtagaacgccaagatctaat
ccagctacttatacaggtgtttttgatttgataagagatatattttcagctacaccagag
tccaaaataagaggatataataaagggagattttcatttaatgttaaaggtggaagatgt
gaggcgtgtagaggacatggggttttaaagattgaaatgcaatttttgccagatgtatat
gttacatgtgatgtttgtaaaggaaaaagatataataaagaaactcttaaggtaaaatat
agagataaaaatatttcagatattttagatatgagtgtagaagaaggagctgaatttttt
aaaaatataaatgctatagggagtatacttgaacttttaaaagatgtaggacttggttat
ataaaacttggacaaccagctactaccttatccggcggagaagctcaaagaataaaattg
acttctgaattaagaaaaagatctacaggaaaaacagtttatatactcgatgagccaaca
actggacttcattttgaagatgtgagaaaacttataggtgttttgaatctattagttgaa
aaaggaaatacagttataataatagaacacaatatggatgttataaaaaatgccgatcat
ataatagatataggaccagaaggtggaatagaaggtggttatattgttggagaaggaaca
cctttagagatatcaaaattaaatacatatactgccaaatacttaaaaaaatatatttaa
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