Octadecabacter sp. SW4: FTO60_00105
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Entry
FTO60_00105 CDS
T06209
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oct
Octadecabacter sp. SW4
Pathway
oct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTO60_00105 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oct03019
]
FTO60_00105 (recQ)
03400 DNA repair and recombination proteins [BR:
oct03400
]
FTO60_00105 (recQ)
Enzymes [BR:
oct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FTO60_00105 (recQ)
Messenger RNA biogenesis [BR:
oct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FTO60_00105 (recQ)
DNA repair and recombination proteins [BR:
oct03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FTO60_00105 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Rhodanese
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
QEE34241
UniProt:
A0A5B9EL38
LinkDB
All DBs
Position
18563..20596
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AA seq
677 aa
AA seq
DB search
MSAATLLRDVFGFDGFRPGQQEIVEAVTDGRNTLAIMPTGGGKSLCFQLPALVRDGVTVV
ISPLIALMRDQVRGLREAGVEAGALTSGNTEEETDAVWRALEQGSLKLLYMAPERLASGG
TQRMLRQAGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADAETRAE
IVEKLFDGAPPDTFLQGFDRPNIHLAFAAKDGPRAQILNFANARKGQSGIVYCGTRAKTE
TLARALGEAGHSACHYHGGMEAEDRRIVERRFQQEDGLIVCATVAFGMGIDKPDIRWVAH
ADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRYRRQQIDEGLAPPERRAADHGRLN
ALTGLAEALACRRQSLLSYFGEDPQPCGNCDLCDKPAEVFDGTTAVRMALSAALRTDERF
GAGHLIDILLGNMTEKVAQRSHDQLPTFGVGKEYSRVQWQAIFRQMMGHDLMRPDGERHG
ALRMTQKARPILRDEAAIQLRRDTIKAAKSGPKVRQMVSEEDALLLSALKAKRRAYAEQQ
GVPAYIIFNDRTLIEMAETRPKNLDDMAGIGGVGAKKLESYGKGFLEVINGEAETLHPTR
RKLAGRAEGDIYDRLLQAQADLARGPHGADKPMSCSASQLAKVAQKKPSDIDALTRLVGD
RHAERFGDAFLEVLSEG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgccacgcttcttcgtgatgttttcggattcgacgggtttcggcccggccaa
caagagatcgtggaagccgtcaccgatgggcgcaatacccttgcgatcatgcccacgggt
ggcgggaaatctctgtgtttccaattgcctgccctggtgcgcgatggcgtcacggttgtg
atttccccgctgattgccctgatgcgtgatcaggtgcgcggcctgcgcgaagcgggtgtc
gaggccggcgcgctgacctctggcaataccgaagaagaaaccgatgcggtttggcgcgcg
ctggaacagggcagtctgaaactgctctatatggcgcccgagcggcttgcatccggcggc
acccagcggatgttgcgtcaggcgggcgtgtcactgattgccgtggacgaggctcattgc
gtcagccaatggggccatgatttccgcccggattatctgcggatcggcgaattgcgccgc
gcgttggacgtcccgctggcggcctttaccgcgacggctgacgccgaaacccgcgccgag
attgtggaaaaactgttcgatggcgcgccgcctgacacgttcttgcaaggtttcgatcgc
cccaacatccaccttgccttcgccgccaaagacgggccgcgcgcgcaaatcctgaacttt
gccaatgcacgcaagggacaatccggcatcgtctattgcggcacacgtgccaagaccgaa
acgctcgcacgggcgctgggcgaagcgggccattccgcctgtcactatcacggcgggatg
gaggccgaagaccgccgtatcgtcgaacgccgctttcagcaagaagacgggctgatcgtt
tgtgccacggtcgcctttggcatggggatcgacaagcccgacatccgctgggtcgcccac
gccgacctgcccaagtcaatcgaggcctattatcaagaaatcggtcgcgcgggccgtgat
ggtgcccctgccgaaaccctgacgctgttcggccctgatgatatccgttaccgccgccag
caaatcgacgaagggctggcacccccagaacggcgcgcagcagatcatggccgcctgaat
gcgctgaccggattggccgaagcgctggcctgtcgccgccaatccctgctgtcctatttt
ggcgaggatccgcagccctgtggcaattgtgacctatgcgacaaacccgccgaggtgttt
gacggaacgacagcggtgcgcatggcgttgtcggccgcgctgcgcaccgatgaacggttc
ggcgcgggccatctgatcgacattctgctgggcaatatgaccgaaaaggtcgcccaacgc
agccacgatcaactgcccacgttcggcgtgggcaaggaatattcgcgcgtccagtggcag
gcgatcttccggcagatgatgggccacgacctgatgcgccccgacggtgaacgccacggt
gcgttgcgcatgacgcaaaaggcccgcccgatcctgcgtgacgaagcggcgatccaactg
cgccgcgacacgatcaaggcggcgaaatccggccccaaggtgcgccagatggtgagcgag
gaagacgcgctgctgctctcggctctcaaggccaagcgccgcgcttatgccgaacagcag
ggcgtgcccgcctatatcatctttaacgatcggacgctgatcgaaatggccgaaacccgt
ccaaaaaacctggacgatatggctggcattggtggtgtcggtgccaaaaagctggaaagc
tatggcaaagggttcctagaggtgatcaacggcgaggcggaaaccttgcaccctacgcgg
cgcaagctggccggacgggccgaaggcgatatttacgatcggcttttgcaggcgcaggcc
gaccttgcgcgcggcccgcatggggcggacaaaccgatgtcgtgttccgcctcgcaactg
gccaaggtcgcgcaaaagaaaccctccgatattgacgcgctgacccgtcttgtcggcgac
cgtcacgccgaaaggtttggcgatgcctttctcgaagttctgtccgagggttga
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