Octadecabacter sp. SW4: FTO60_00300
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Entry
FTO60_00300 CDS
T06209
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
oct
Octadecabacter sp. SW4
Pathway
oct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTO60_00300 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oct03019
]
FTO60_00300 (rnr)
03016 Transfer RNA biogenesis [BR:
oct03016
]
FTO60_00300 (rnr)
Enzymes [BR:
oct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FTO60_00300 (rnr)
Messenger RNA biogenesis [BR:
oct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FTO60_00300 (rnr)
Transfer RNA biogenesis [BR:
oct03016
]
Prokaryotic type
tRNA degradation factors
FTO60_00300 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_Crp_2
MarR
Motif
Other DBs
NCBI-ProteinID:
QEE34275
UniProt:
A0A5B9EIY4
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Position
63518..65770
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AA seq
750 aa
AA seq
DB search
MKRIPSRDEILQWISENPTQSAKRDIARAFGIKGAARIDLKRILRELEDEGHLEKRKKTY
RDPDRLPPVSVLEIVGPDADGDLIARPVEWFGKGDVPVIAFIAAKGDPALGKGDQILARL
TKEQGEGFDYTARLIRRIGTNPLRILGVFRRGSDGGRVLPIDKGSDKEWSVAADLMNGAK
DGELVEAEQAGPKGRMGLPKARIVARLGDPTAPRAVSLIAIHQHGIPDHFPDDVVAEADA
AKTAGLDGREDLQDLPLITIDPWDARDRDDACLVQPDDDPKNPNGHILWVAIADVAHYVT
TGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHENVPRACVAVRMRVNAAGHKID
HSFHRGLMRSVASLNYEEVQAGMDGAPNDKVAPLMDDIIRPLYACYESLRKARVERQPLE
LDLPERQIVINEEGHVTAVNFKERLDAHRLIEEFMVLANVAAAETLIARETQLLFRVHEE
PSPEKLDALRETAAASGLTLAKGQVLQTAHLNRLLEQAEGTPDDELINMATLRSMTQAYY
NAENFGHFGLALRNYAHFTSPIRRYSDLIVHRALITAHGWGKDGLQPEDIDRLDDTAQLI
SDTERRSMMAERDTTDRYLAAYLSDHVGAEMEGRISGIARFGVFVRLDETGADALVPMRN
LGAEYFRHDPDSQTLTGADTGVVIRLGQPVTVALTEAVPDTGGLVVDLLRLDGRTVTKGT
GRGGKPPRRKQGAARKKAAKTARKVKRSRK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatcccatccagagacgaaatcctgcaatggatttccgaaaatccgacccaa
tcggccaagcgtgacatcgcgagggcgttcgggatcaaaggcgccgcgcgcatcgacctc
aagcggatcctgcgcgagcttgaagacgagggccaccttgagaaacgcaagaagacctat
cgcgaccctgatcggcttccgccggtttcggttctcgaaattgtcgggccggacgccgat
ggcgacctgatcgcgcggcccgttgaatggttcggcaagggtgatgtgccggtgattgcc
ttcatcgctgccaagggcgacccggcgctgggcaagggcgatcagattctcgcacggttg
accaaggagcagggcgaaggttttgactatactgcccgcctgatccgccgcattggcacc
aaccccctgcgtattctgggtgtgttccggcgcgggtctgacggcggccgtgtgctgccc
atcgacaaagggtctgacaaggaatggagcgtggctgccgatttgatgaacggtgccaag
gacggcgaattggtcgaggccgagcaggccggaccaaaggggcgcatgggtctgccaaag
gcgcgtatcgtggcgcggcttggtgatccgaccgcaccgcgcgccgtgtcgctgatcgcg
attcaccagcatgggatacccgatcatttccccgatgatgtcgtggccgaagcggacgcc
gcaaaaacggccggtctggacggccgggaagacctgcaagacctgccgctgatcaccatc
gacccgtgggatgcgcgtgaccgtgatgatgcctgccttgtgcagccagatgatgaccca
aagaaccctaatggacatatcctttgggtcgcgattgccgatgtggcgcattatgtcacg
accgggtccgcgcttgaccgcgaggcgcgcaagcgtggcaattccacctatttccccgat
cgcgttgtgccgatgcttccggaccggttgtctggtgatttgtgttccctgcacgagaac
gtgccgcgcgcctgtgttgcggtgcgcatgcgggtcaacgcggcgggtcacaagatcgat
cacagctttcatcgtggcctcatgcgctcggttgcatcgctgaactacgaggaagtgcag
gcgggcatggatggcgcgccaaacgacaaggtcgcgccgctgatggatgatatcatccgc
ccgctttacgcctgctacgaaagcctgcgcaaggcccgcgtcgaacgccagccgcttgaa
ctggacctgcctgaacgtcaaatcgtgatcaatgaggaaggtcatgtcacggccgtgaat
ttcaaggaacgccttgatgcccaccgcctgatcgaggaattcatggtgctggccaatgtc
gctgccgccgaaaccctgatcgccagggaaacccagctgctgttccgcgttcacgaagaa
ccgagccccgaaaaactggacgccctgcgcgaaaccgccgccgcaagcgggttgacgctg
gccaaggggcaggtgctgcaaacggcgcatctgaaccgtctgctggaacaggccgagggc
acgccagacgacgaattgatcaacatggcgaccctgcggtcaatgacgcaggcctattac
aacgctgaaaacttcgggcatttcgggctggccctgcgcaactacgcgcatttcacatcg
ccgatccgccgttacagcgatctgatcgtgcatcgcgcgctgatcaccgcgcacggctgg
ggcaaggacggcctacaacccgaagatatcgaccgccttgatgataccgcccagctcatc
agcgataccgagcgccgctcgatgatggccgaacgcgataccacggatcgctaccttgcc
gcctatctgtccgaccatgtgggcgcggaaatggaggggcggatcagcgggatcgcccgt
tttggcgtatttgtgcgcctagatgaaaccggcgcggatgcgctggtgccgatgcgcaat
ctgggggccgaatatttccgccacgatcctgacagccagaccctgacaggggccgacacc
ggcgtggtcattcgtttggggcagcccgtcaccgtggccctgaccgaagctgtgcccgat
accggtgggctggtcgtggatttgctccgccttgatgggcgcacagtgaccaaaggcacg
ggacgtggcggtaaacccccgcggcgcaaacagggggcggcgcgcaaaaaggcggccaag
accgcgcgcaaggtcaaacgcagccgcaagtga
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