Octadecabacter sp. SW4: FTO60_05195
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Entry
FTO60_05195 CDS
T06209
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
oct
Octadecabacter sp. SW4
Pathway
oct03420
Nucleotide excision repair
oct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FTO60_05195
03430 Mismatch repair
FTO60_05195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oct03400
]
FTO60_05195
Enzymes [BR:
oct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FTO60_05195
DNA repair and recombination proteins [BR:
oct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FTO60_05195
MMR (mismatch excision repair)
Other MMR factors
FTO60_05195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
QEE35161
LinkDB
All DBs
Position
1033015..1035366
Genome browser
AA seq
783 aa
AA seq
DB search
MSSFSDDDAFEAAAIPLSQRAMARPAAPYLDGLNPAQSEAVQVLDGPVLMLAGAGTGKTK
ALTCRIAHLLTTGTARPNEILAVTFTNKAAREMKNRVGALLGEAVEGMPWLGTFHSICAK
LLRRHAELVGLKSNFTILDSDDQLRLLKQLVRAENIDDKRWPARLLAGIIDSWKNKAWTP
ANVPVSESSAYDGKGVEIYAAYQARLKTLNACDFGDLLLHVVTIFQTNDDLLTQYQRWFR
YILVDEYQDTNVAQYLWLRLLAGGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAH
VVRLEQNYRSTGHILGAAGGVIAANTNRLGKTLFTDGDDGEQVRLIGHWDGEEEARWIGD
EIEAMQSGTRGRAQMGLDSMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRD
AMAYFRLAVSQDDDLAFERIVNTPKRGLGDKAVQTIQMTARSNGVNLVDGARLCVEGGLI
KGKGGAALGELVQGLDRWHRQVREEADTHVELAEMILDESGYTGFWQADKTPEAPGRLEN
LKELVKALENFENLQGFLEHVSLIMDNETEEQGEKVSIMTLHAAKGLEFPAVFLPGWEDG
LFPSQRSMDESGLKGLEEERRLAYVGITRAEEICTISFAANRRVYGQWQSALPSRFIDEL
PEQHVEVLTPPGLYGGGYGAAAPVQSHLHDRAASANVYNSPGWKRLQERSQTRSQPAPRG
VTIDLDAVASFTVGDRVFHQKFGYGEIIAIDTDKLEVEFDRAGTKKVVARFIVAADKADD
VPF
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtttttccgatgatgacgcctttgaagccgccgcgattcccctgtcgcaacgg
gcgatggcccgccctgcggccccctatctggacgggctgaaccccgcccaaagcgaggcg
gttcaggtgctggatggcccggtcttgatgctggcaggggccggcacgggcaagaccaag
gcgctgacctgccggatcgcgcatttgctgaccacgggcaccgcgcggcccaatgaaatt
ttggccgtgacctttaccaacaaggccgcgcgcgagatgaaaaaccgcgtcggtgcgctt
ttgggcgaggccgttgaaggaatgccctggctgggcacctttcattcgatctgtgccaaa
ctgctgcgccgccacgcggaacttgtggggttgaaaagcaatttcaccattctggacagc
gatgaccagctgcgcctgctgaagcaattggtgcgggcggaaaacatcgacgacaaacgc
tggcccgcgcgtcttctggcggggatcatcgacagttggaagaacaaggcgtggaccccc
gccaatgtgcctgtctcggaaagcagtgcctatgacggcaaaggggtcgagatttacgcc
gcctaccaggcccggctgaaaaccctgaatgcctgcgatttcggcgatctgctgctgcat
gtggtgacgattttccagaccaacgacgacctgctgacacagtatcaacgctggttcaga
tatatcctcgtggatgaatatcaggataccaacgtggcgcagtatttgtggctgcggctg
ttggcgggcgggcataaaaacatctgttgcgtcggtgacgatgatcagtcgatctatggc
tggcgcggggccgaagtgggcaatatcctgcggttcgaaaaggattttccgggcgcgcat
gtggtccggctggaacagaactaccgctcgaccgggcatattctgggcgctgcgggcggg
gtgattgcggccaacacgaaccggctgggcaagacactgtttaccgacggcgacgacggc
gaacaggtccgcctgatcggccactgggatggcgaggaagaggcccgctggatcggtgac
gagattgaggcgatgcaaagcggcacccgtggccgtgcgcagatgggccttgatagcatg
gcgatccttgtgcgcgcctcccaccagatgcgcgcgttcgaggatcgttttctgaccatc
ggcctgccctaccgcgtgatcggcgggccacggttctatgaacggctcgagattcgcgat
gcgatggcctatttccgccttgccgtcagccaggacgacgatctggcctttgaacggatc
gtcaatacgcccaaacggggcttgggtgacaaggccgtgcagacgatccagatgacggca
cgatctaacggcgtcaatctggtcgacggcgcgcgcctgtgcgtcgaaggcgggctgatc
aagggcaagggtggcgcggcactgggcgaattggtgcaggggctggaccgctggcaccgc
caggtgcgcgaggaggctgacacccacgtcgaactggccgagatgatcctggatgaatcc
ggctacaccggtttctggcaggccgacaaaacacccgaagcgccggggcggctcgagaac
ctcaaggaactggtcaaggccttggaaaactttgaaaacctgcaagggtttctggaacat
gtcagcctgatcatggacaacgaaaccgaagagcagggcgaaaaagtcagcatcatgacg
ctgcacgcggccaagggtctggaatttcctgccgtgttcctgcccggctgggaggatggg
ctgtttcccagtcaacgctcaatggatgaaagcgggctcaaggggctcgaggaagaacgc
cgtcttgcctatgtgggcatcacccgagccgaggaaatctgcaccatttcgtttgccgcg
aaccggcgcgtttatggccaatggcaatcggcgctgcccagccgtttcattgatgaattg
cccgaacagcacgtcgaggtgctgaccccgccgggcctttatggtggggggtatggggcg
gccgcacctgtgcaatcgcacctgcacgaccgcgcggccagtgcgaatgtctacaattcg
cccggatggaaacgcctgcaggaacgcagccagacgcgcagccaacctgcgccgcgcggc
gtcacgattgatctggacgccgtcgcgtcctttacggttggcgaccgcgtgttccaccag
aaattcggctacggtgaaatcatagcgattgacaccgacaagcttgaagtcgaatttgac
cgcgctggcaccaaaaaggtcgtcgcgcggtttatcgtggccgccgacaaggcggatgat
gtgccgttttag
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