Octadecabacter sp. SW4: FTO60_13365
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Entry
FTO60_13365 CDS
T06209
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
oct
Octadecabacter sp. SW4
Pathway
oct03030
DNA replication
oct03430
Mismatch repair
oct03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FTO60_13365 (dnaE)
03430 Mismatch repair
FTO60_13365 (dnaE)
03440 Homologous recombination
FTO60_13365 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oct03032
]
FTO60_13365 (dnaE)
03400 DNA repair and recombination proteins [BR:
oct03400
]
FTO60_13365 (dnaE)
Enzymes [BR:
oct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FTO60_13365 (dnaE)
DNA replication proteins [BR:
oct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FTO60_13365 (dnaE)
DNA repair and recombination proteins [BR:
oct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FTO60_13365 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QEE37362
LinkDB
All DBs
Position
complement(2701613..2705116)
Genome browser
AA seq
1167 aa
AA seq
DB search
MTEAPRFIHLRTHTEYSLLEGAVPVKKIAGIAAAVGMPAVAVTDTNNMFCALEFSETAAR
EGVQPIIGCQMDLAYIATEAGKRPEAPAPVVLLAQNEAGYMNLMKLNSAAYIDKGGELPQ
VTPDDLERHATGLICLTGGPDGPVGRLLRNGQRPAADALVTRLKAIYGDRLYMELQRHPE
DGGLPEAEKLSEQGHVEMAYAMDIPLVATNDVYFPKAQIYEAHDALLCIADGAYVDQQEP
RRRLTPQHYFKSQQEMATLFADLPEALENTVEIARRCAFRTYTRDPILPKFADDEIEELR
RQANAGLQARLAVIPHAASVEEYQKRLDFELEIIEGMGFPGYFLIVADFIKWSKDHDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA
DEPRLREEAKNEEVVARLLDYGQQLEGLLRNASTHAAGVVIGDRPLDELVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIRKSGRPLHMAADGAQLYAPATGTE
NDINAIPLDDAASYKLYASAKTVAVFQVESSGMMDALRRMKPDCIEDIIALVALYRPGPM
ENIPKFCEVKNGLSERELLHPTIDHILDETQGIIVYQEQVMQIAQEMAGYSLGGADLLRR
AMGKKIQAAMDAERPKFLEGSAKNGVDKTKATEVWNLLDKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVRKGLALPWVPPCVNRSNATFDVVDGK
LVYGLGALKNVGVDAMRLIVEGRDGRDFATLFDLARRVDLKRVGKRPMEMLARAGAFDIL
DPNRRRVFESLDALVGYSAAIHDQKNSNQVSLFGEAGDDLPEPRLSPAEDWLPNDRLSEE
YKAIGFYLSGHPLDDYRAALKRAKAVTFEELTAEAEERGATIKKVGAKVEGRSERKNARG
TRYAFVQFSDPTGPFEAIMFSDTLDVSRDHLEGGALVTAQIEATMEEGQLKLLCRGVAPI
DISIADAGATGLRVFLDDVGAIASVANVLQDAVSNGVKGGRGPITFCVLDPAELGEVDVT
LNDEFPVSPQIKGALRSLGGVLDVQEL
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagccccccgattcattcacctgcgcacgcatacggaatattccctgttggag
ggggccgttccggtcaagaaaatcgccggtattgccgccgccgtcggcatgcctgccgtg
gcggttactgataccaacaacatgttctgcgcgctcgaattttccgaaacggcggcgcgt
gaaggcgtgcagccgatcatcggttgtcagatggatctggcttacattgcgaccgaggcg
ggcaagcgccccgaagcgcctgcgcccgtggttttgctggcccagaacgaagcgggctac
atgaacctgatgaagctcaactcggccgcttatattgacaagggcggggagctgccgcag
gtcacgcctgacgatctggagcgccatgcgacggggctgatttgtcttacgggtgggcca
gacgggcctgtcgggcggctcttgcgcaacggtcaacgccccgctgccgacgccctggtg
acacgtctcaaggcgatttacggcgaccgtctttacatggaattacagcgccaccccgaa
gacggcgggttgcccgaggctgaaaaactgtccgaacagggccacgtggaaatggcctat
gcaatggatattccgctggttgcgaccaacgatgtctatttccccaaagcgcagatttac
gaggcacatgacgcattgctgtgcatcgcggacggggcctatgtggaccagcaggaaccg
cgccgccggttgacgccgcagcactatttcaagtcccagcaggaaatggcgaccctgttc
gccgacctccccgaggcgctggagaacacagttgaaatcgcccgccgctgcgcgtttcgc
acctatacacgcgatccgatcctgcccaagttcgccgatgatgagatcgaggaattgcgc
cgtcaggccaacgccggattgcaggcgcgcctggcggtgatcccccatgcagcaagcgtg
gaagaataccagaaacgccttgatttcgagcttgagattattgaaggcatgggatttcct
ggctacttcctgatcgtggccgatttcatcaaatggtccaaagaccacgatattcctgtc
ggccccgggcgcggatcgggagcgggtagccttgtggcctatgcgttgacgatcaccgac
cttgatccgctgcgctattcgctgctgtttgaacgcttcctgaaccccgaacgtgtgtcg
atgcccgactttgacatcgacttttgcatggatcgccgcgaggaggtgatccgctacgtc
caggaaaaatacgggcgcgacaaggttggccagatcatcacattcggcgcgctgctgtct
aaggctgcggtgcgcgatgtgggccgcgtcttgcagatgccatatgggcaggtggatcgc
ctctcaaagatgatccccgtcgaaggggtcaaacccgtcagtatcgaaaaggcgctggcg
gacgagccgcgcctgcgcgaagaggccaagaacgaagaggtcgtcgcgcgcctgcttgat
tacgggcagcagcttgaggggctgttgcgcaatgcctccacccatgctgcgggtgtggtg
attggtgatcgtccgctggatgaactggtgccgctttatcaggatccgcgttcggacatg
cccgcgacacagttcaacatgaaatgggtcgaacaggcggggttggtcaaattcgacttt
ctgggcctgaagaccctgacagtgatccagaacgcggttgatctgatccgcaaatcgggc
cgccccctgcatatggccgccgatggcgcgcaattgtatgcgcccgcgactggcaccgag
aacgatatcaacgcgatcccgctggacgacgcggcatcctacaagctttatgccagtgcc
aagacggtcgccgtgttccaggtggaatccagcggcatgatggacgccctgcgccgcatg
aaaccggactgtatcgaagacattatcgcgctggtcgccctttatcgccccggcccaatg
gagaatattcccaagttctgcgaggtcaagaatggactgtcagagcgcgaattgctgcac
ccgacgattgatcacattctggacgaaacccagggcatcatcgtctatcaagagcaggtg
atgcagatcgcccaggaaatggcgggctacagccttggcggcgctgacttgctgcgccgt
gcgatgggcaaaaaaattcaggctgcaatggatgccgagcgtccgaaattccttgaaggg
tcggccaaaaacggcgtcgacaagaccaaggcgaccgaggtctggaaccttctggacaag
ttcgccaactacggtttcaataaatcccacgcggcggcctatgctgtggtcagctatcaa
accgcatggctcaaggccaatcatccggttgaattcatggccggtgtgatgaattgcgat
attcacctgactgacaagctggccgtctatttccaagaggtccgcaaggggttggcgctg
ccctgggtgccgccttgcgtgaaccgctcgaatgccacattcgatgtcgtggatggcaag
ctggtctatggcctcggcgcgctgaaaaatgtgggcgtcgatgcgatgcggctgatcgtc
gaaggccgtgacgggcgcgatttcgcgaccctgttcgatctggcgcgccgcgttgatctg
aaacgtgtcggcaagcgcccgatggaaatgctggcgcgcgccggcgcctttgacattctg
gacccgaaccgtcgccgcgtgtttgaaagcctggatgcgctggtcgggtattccgccgcg
atccatgatcagaagaactccaaccaggtctcgcttttcggcgaggcgggcgatgatctg
cccgaaccgcgcctatcccccgccgaggactggctgccaaacgatcgtctgtccgaagaa
tacaaggccatcggcttttacctgtccggccatccactggatgactaccgtgccgcactg
aaacgcgccaaggcggttacattcgaggaactgaccgccgaagccgaggagcgcggcgcg
acaatcaagaaggtcggtgccaaggtcgaaggccgctccgagcgcaagaatgcgcgcggc
acccgctatgcctttgtgcagttttccgacccgactggcccattcgaggccatcatgttt
tccgacacgcttgatgtcagccgtgaccaccttgagggcggcgcgctggtgacggcccag
atcgaggcgacgatggaagaggggcagctgaaattgctgtgccgtggcgtggccccgatt
gacataagcattgccgatgcaggtgcgacgggcctgcgcgtgtttctggatgatgtcggt
gcgatcgcctcggttgccaatgtgttgcaggacgccgtgagcaacggcgtgaaaggcggg
cgtgggccgatcaccttttgtgtgctggacccggccgaactgggcgaagttgatgtcacc
cttaacgatgaatttcccgtgagcccgcaaatcaagggcgcgctgcgttcgctgggtgga
gtattggatgtgcaggaattgtga
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