Oryctolagus cuniculus (rabbit): 100008878
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Entry
100008878 CDS
T03373
Name
(RefSeq) coatomer subunit alpha isoform X2
KO
K05236
coatomer subunit alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocu04131
]
100008878
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocu04147
]
100008878
Membrane trafficking [BR:
ocu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
100008878
Exosome [BR:
ocu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100008878
Exosomal proteins of bladder cancer cells
100008878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
100008878
NCBI-ProteinID:
XP_002715282
Ensembl:
ENSOCUG00000014479
LinkDB
All DBs
Position
13:33051020..33334846
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGWDVEEDLELPPELDVPPGAAG
GAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQFGPYKQLFL
QTFARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMEIERKKLPKETLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKSQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctaaccaaattcgagaccaagagcgcgcgggtcaaagggctcagttttcaccccaaa
agaccctggatcctgacaagtttacacaatggggtcatccaattatgggactaccgaatg
tgcaccctcattgacaagtttgatgaacatgatggtcccgtgcgaggcattgacttccac
aaacaacagcccctgttcgtctctggaggagatgattataagatcaaggtttggaactac
aagcttcggcgctgtctttttacattgcttggacacttagattatatccgcaccacattt
tttcatcatgaatatccttggattctgagtgcctctgacgatcagaccatccgagtgtgg
aactggcagtcgagaacctgtgtctgtgtgttaacagggcacaaccattatgtaatgtgt
gctcagttccacccctcagaagacttggttgtatcagccagcctggaccagactgtgcgc
gtttgggatatttctggtctaaggaaaaaaaacttgtcccctggtgcagtggagtcggat
gtgagaggaataactggggttgatctgtttggaacaacggatgcagtggtgaagcatgta
ctagagggtcacgatcgtggagtaaactgggctgctttccacccgaccatgccccttatt
gtttctggggcagatgaccgccaagtgaagatctggcgcatgaacgaatcaaaggcatgg
gaggttgatacctgccggggccattacaacaacgtatcttgtgccgtcttccatcctcgc
caagagttgatcctcagcaattctgaggataagagtattcgagtgtgggatatgtccaag
cggactggagttcagaccttccgcagggaccacgatcgtttctgggtcctagctgctcac
cccaaccttaacctctttgccgcaggccatgatggtggcatgattgtgtttaagttggaa
cgagaacggccagcttatgctgtccatggcaatatgctgcattatgtcaaggaccgattc
ttacgacagttagatttcaacagttccaaagatgtagctgtgatgcagttgcggagtggt
tcaaagttcccagtattcaatatgtcatacaatccagcagaaaatgccgtcctactgtgc
acaagagccagcaatttagagaatagtacctatgacctgtacaccatccccaaggatgct
gattcccaaaatcctgatgcccctgaagggaaacggtcctcaggcctgacagccgtttgg
gttgcccgtaatcggtttgctgtcctagatcggatgcactcgcttctgatcaagaatctg
aagaacgagatcaccaaaaaggtgcaagtgcccaactgtgatgagatcttctatgctggt
acaggcaacctcctacttcgggatgcagactccatcacactctttgatgtccagcaaaaa
cggactctggcatctgtgaagatttccaaggtgaaatacgttatttggtcagcagacatg
tcccatgtagcactactggctaaacatgccattgtgatctgtaaccgcaaactggatgct
ctgtgtaacattcatgagaacattcgtgtcaagagtggggcctgggatgagagtggggta
tttatctataccacaagcaaccacatcaagtatgctgtcaccaccggggaccatgggatc
atccgaactctggatttacccatctatgtcacgcgggtgaaaggcaacaatgtgtattgc
ttagacagggaatgtcgtcctcgggtactcaccattgatcccactgagttcaaattcaag
ctggccctgatcaacagaaaatatgatgaggtactacacatggtgaggaatgccaaactg
gtaggccagtctatcattgcttatctccagaagaagggctatcctgaagttgcacttcat
ttcgtcaaggatgagaaaactcgcttcagtctggcattggagtgtggaaatattgagatt
gctctggaagcagccaaagcactggatgacaagaactgctgggaaaagctgggagaagtg
gccctgctgcaggggaaccaccagattgtggaaatgtgctatcagcgcaccaaaaacttt
gacaaactttccttcctgtaccttataactggcaacttggagaaacttcgcaagatgatg
aagattgctgagatccgaaaggacatgagtggccattatcagaacgccctatacctgggt
gatgtgtcagagcgagtgaggatcctaaagaactgtgggcagaagtccctggcctatctc
acagctgctacccatggcttagatgaagaagctgagagcctaaaggagacatttgaccca
gagaaggaaacaatcccagacattgaccctaatgccaagctgcttcaaccacctgcacct
atcatgccactggataccaactggccattattgaccgtgtcaaaaggattctttgaaggc
accattgccagcaaggggaaaggaggagctctggctgccgacattgatattgacactgtg
ggcactgaaggctggggagaggatgcagagctgcagctggatgaagatgggtttgtggag
gccacagaaggtttgggagatgatgctcttggcaagggacaggaagaaggaggtggctgg
gatgtagaagaagacctggagctccctcctgagctggatgtaccccctggggcagctggt
ggggctgaagatggattctttgtgcccccgacaaagggaacaagtcctactcagatctgg
tgcaataactctcagcttccagttgatcacatcctggcaggttcttttgaaacagccatg
cggcttcttcacgaccaggtaggggtaatccagtttggcccctacaagcaactgttccta
cagacatttgcccgaggccgtaccacgtatcaggctctgccctgcctgccctccatgtat
ggctaccctaatcgcaattggaaggatgcagggttgaaaaatggtgtaccagcagtgggc
ctgaagcttaatgacctcattcagcggttgcaactgtgctaccagctcaccacggttggg
aagtttgaggaagctgtggaaaaattccgttctatcctgctcagtgtgccacttcttgtt
gtggacaataaacaggagattgcagaggcccagcagctcattaccatttgccgtgagtac
attgtgggtttgtccatggagatagaaagaaagaagctgcccaaagagaccctagaacag
cagaagcgcatctgtgagatggcagcctacttcacccactcaaacctgcagcctgtgcac
atgattttggtcctgcgtacggctctcaacctcttcttcaagctcaagaacttcaaaaca
gctgccacctttgctcggcgcctgctggaacttgggcccaagcctgaagtggctcagcag
acccgaaaaatcctgtctgcctgcgagaagaatcccacagacgcttaccagctcaattac
gacatgcacaacccctttgacatctgtgccgcatcttaccggcccatctaccgaggaaag
ccagtggagaagtgtcctctcagtggggcctgctattccccagagttcaaaagtcagatc
tgcagggtcactacagtgacagagattggcaaagatgtgattggtctaagaatcagtcct
ctgcagtttcgctaa
DBGET
integrated database retrieval system
