Oryctolagus cuniculus (rabbit): 100009005
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Entry
100009005 CDS
T03373
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain precursor
KO
K19719
collagen type II alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04151
PI3K-Akt signaling pathway
ocu04510
Focal adhesion
ocu04512
ECM-receptor interaction
ocu04518
Integrin signaling
ocu04974
Protein digestion and absorption
ocu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100009005 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100009005 (COL2A1)
04518 Integrin signaling
100009005 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100009005 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100009005 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100009005 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
100009005 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100009005 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100009005
NCBI-ProteinID:
NP_001182600
Ensembl:
ENSOCUG00000013629
UniProt:
G1T5V9
LinkDB
All DBs
Position
8:complement(111653653..111675841)
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAALRCQGQDVQEAGSCVQEGKRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDTKDCLSPEIPFGECCPVCPTDLATASGKPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPDPAGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARG
LPGTPGTDGPKGAPGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKEGPKGARGDSGPAGRAGDPGLQGPAGPPGLKGEPG
DSGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTGLQG
LPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGALRQHDADVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLQLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPATVPKKNWWSSKSQKQQHVWFGETINGGFHFSYGDSSLPPNTANVQMTFLRL
LSTEGSQNITYHCKNSVAYLDEATGNLKKALLLQGSNDVEIRAEGNSRFTYTVLQDGCTK
HTGKWGKTVIEYRSQKTSRLPITDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggcgccccagaccctggtgctgctgacgctgctcgtcgccgctgcc
cttcggtgtcagggccaggatgtccaggaggctggcagctgtgtgcaggaggggaagagg
tataatgataaggatgtgtggaagccggagccctgccggatctgtgtctgtgacacgggg
actgtcctgtgcgacgacataatctgtgaagacaccaaggactgcctgagccccgagatc
cccttcggagagtgctgccccgtctgccctactgacctcgccactgccagtgggaaacca
ggaccaaaggggcagaaaggagaacctggagacatcaaggatatcgtaggacctaaagga
ccccctgggcctcagggacctgcaggtgaacagggacccagaggtgaccgtggtgacaaa
ggcgaaaagggtgcccctggacctcgtggccgagatggagagcctgggacccctggaaat
ccgggcccccctgggccccctggaccgcccggcccccctggccttggtggaaactttgct
gcccaaatggctggaggatttgacgagaaggctggaggcgcccagatgggagtgatgcaa
ggcccgatgggccctatgggacctcgagggcctcctgggcctgctggtgcccctggaccg
caaggatttcaaggcaaccctggggagcctggcgagcctggcgtctctggtcccatgggt
ccccgcggtccccctggccctcctggcaagcctggtgacgatggcgaagctggaaaacct
ggaaaacctggtgaaaggggccttcccggccctcagggcgcccgtggcttcccgggaacc
ccaggccttcctggtgtcaaaggtcacagaggctacccagggctggacggagcaaaggga
gaagctggcgctccaggcgtgaagggtgagagtggctcccccggcgagaatggctctcca
ggccccatgggtccccgtggcctccctggcgagagaggacggactggccccgctggcgct
gcaggtgctcggggcaacgacggccaaccaggacccgccgggcctccgggtcctgtcggt
cccgctggcggtcctggcttccctggtgctcctggggccaagggtgaagctggccccaca
ggggctcgcggccccgaaggcgcccagggtcctcgcggtgaacctggcactcctgggtcc
cctgggcctgctggggcttctggcaatcccggaacagacggaattcctggagccaaaggg
tctgctggtgctcctggcatcgctggtgctcctggcttccctgggcctcgtggtcctcct
ggccctcaaggtgcaactggtcccctgggccccaaaggccagacgggtgaacctggcatt
gctggcttcaaaggagaacaaggtcccaagggagaaccggacccggctggtccccaggga
gcccctggtcccgctggagaagaaggcaagagaggcgcccgaggagagcccggcggtgct
gggcctgctggtccccctggagagaggggtgctcctggcaaccgaggtttcccaggtcag
gatggtctggcagggcccaagggagcccctggagaacgagggcccagtggccttgctggc
cccaaaggagccaatggtgaccccggccgccctggagaacctggccttcctggagcccgg
ggtctcactggccgccccggcgacgctggtccccaaggcaaagtcggtccttcgggagct
cctggtgaagatggtcgccctggaccccccggtcctcaaggggcacgtggacagcctggc
gtcatgggcttccctggccccaaaggtgccaatggtgaacctggcaaagctggtgagaag
ggacttcctggagctcctggcctgagaggtcttcctggcaaagatggtgagacaggagct
gcaggacctcccggccctgctggacctgctggtgagcgtggcgagcagggtgctcctggg
ccttctgggttccagggactccctggcccccccggccccccaggtgaaggtggaaaacca
ggtgaccagggtgttcctggtgaagctggtgcccccggcctcgtgggtcccaggggtgaa
cgcggattcccaggtgaacgtggctccccaggtgcccagggcctccagggtgcccgtggc
ctgcctggcacccctggcactgatggccccaaaggtgcacctggtcctgctggcccccct
ggggctcagggccccccaggtctgcaagggatgcctggagagaggggagcagcgggcatc
gcagggcccaagggagacaggggcgacgttggtgagaaaggccccgagggagcccccgga
aaggacggcggacgaggtctgactggtcccatcggccctcctggcccggccggcgccaac
ggtgagaagggagaagttgggcctcctggtcctgcaggaagtgctggtgctcgtggggcg
ccgggtgaacgtggagagactggtcctcccggacctgctggattcgctggaccgcctggt
gctgacggccagcctggtgccaagggagagcaaggagaagccggccagaaaggcgatgca
ggcgcccctggccctcagggcccctctggagcaccggggcctcagggtcctactggagtg
accggtcctaaaggagcccgcggtgcccaaggccccccgggagccaccggattccctgga
gctgctggccgcgtcggaccccccggctccaacggcaaccctgggccccccggcccccct
ggtccttctggaaaagaaggccccaaaggagcgcgaggagacagcggccctgccggccga
gctggagaccccggcctccaaggtcctgccggaccccctggcttgaagggagagcctgga
gacagcggtccctccggcgccgatggccccccaggtccccaaggtctggctggtcagcgg
ggcatcgtgggtcttcctgggcagcgtggtgagagaggattccctggcctgcctggcccg
tcgggtgagcccggcaagcaaggagcaccaggcgcgtctggagaccgaggtcctcctggc
cccgtgggtcctcccggcctgacaggccctgcaggtgaacctggacgagagggaagcccc
ggtgccgacggaccccctggcagagacggtgcagctggagtcaagggtgaccgtggggag
accggtgctgtgggtgctcccggagcccctggacctcctggctctcctggccccgccggc
ccgactggcaagcagggagaccgaggggaagctggtgcacaaggccccatgggcccctca
ggaccggccggagcccggggaatcccaggcccacaaggcccccgcggtgacaaaggagaa
tctggagagcccggcgagaggggactgaagggacaccgtggcttcacaggcctgcagggc
ctgcccggcccacccggcccttctggagaccaaggtgctgctggtcctgctggtccgtcc
ggccccaggggtccccccggccctgtcggtccctctggcaaagacggcgccaatggaatc
ccaggacccatcgggccccccggtccccgcggacgttcaggcgaaactggccctgctggt
cctcctggaaatcccggaccccctggccctccaggaccccccggccccggcatcgacatg
tccgcctttgctggcctaggccagagagagaagggccccgaccccctgcagtacatgcgg
gccgacgaggcggccggcgccctgcggcagcacgacgcggacgtggacgccacgctcaag
tccctcaacaaccagatcgagagcatccgcagccctgagggctcacgcaagaaccctgct
cgcacctgccgggacctgcagctctgccaccccgagtggaagagcggtgactactggata
gaccccaaccaaggctgcaccttggacgccatgaaggttttctgcaacatggagaccggc
gagacctgcgtctaccccaacccggccaccgtgcccaagaagaactggtggagcagcaag
agccagaagcagcagcacgtgtggtttggggagaccatcaatggcggcttccacttcagc
tatggagacagcagcctgcctcccaacactgccaacgtccagatgaccttcctgcgcctg
ctgtccactgagggctcccagaacatcacctaccactgcaagaacagcgtggcctacctg
gatgaagccaccggcaacctcaagaaggccctgctcctgcagggctccaacgacgtggag
atccgggccgagggcaacagcaggttcacctataccgtgctgcaggatggctgcacgaaa
cacaccggtaagtggggcaagactgtcatcgagtaccggtcccagaagacctcgcgcctg
cccatcaccgacatcgcgcccatggacatcggagggcctgagcaggaattcggggtggac
atagggcccgtctgcttcttgtaa
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integrated database retrieval system
