Oryctolagus cuniculus (rabbit): 100009174
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Entry
100009174 CDS
T03373
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100009174
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocu00535
]
100009174
Proteoglycans [BR:
ocu00535
]
Extracellular matrix (ECM) proteoglycans
Others
100009174
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
FN3_DSCAM-DSCAML_C
VWA_2
Fn3_PBP1
Pur_ac_phosph_N
Fn3_ROS1
Collagen
Interfer-bind
DUF4998
GldM_4th
Copine
A2M_BRD
Motif
Other DBs
NCBI-GeneID:
100009174
NCBI-ProteinID:
XP_051711475
Ensembl:
ENSOCUG00000015320
LinkDB
All DBs
Position
12:93739161..93866345
Genome browser
AA seq
3121 aa
AA seq
DB search
MRIRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWARPADPIVGYRITVD
PTTDGPTKEFTLAASTTETLLSDLIPEIEYVVTITSYDEVEESVPVIGQLTIQTGDPTKA
GEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKRIPYKGGNTMTGDAIDYLVKNTFLESAGARVG
FPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIATEVSSKYIKLSWNPSPSA
VTGYKVLLTPMTTGSRHHALSVGPQTTTLSIRDLSADTEYQISVSAMKGLTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLAKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLNFSEVTSYSFKTDWSPAGENVF
SYHITYKEASGDDEVTVVEPASSTSVVLHNLKPETLYLVNVTAEYEDGFSIPVSGEETTA
EVKGAPRNLKVTDETTDSFKITWTQAPGKVLRYRIIYRPVAGGESKEVTTPANQRRRTLE
NLTPDTKYEVSVIPEYLSGPGSPLTGNAATEEVRGNPRDLRVSDPTTSSMKLSWSGAPGK
VKQYLVTYTPVAGGETQEVTVRGDSTNTVLRGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPRDLITKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVEAGEKNLPGDALHT
MIENLQPETKYKISVFATYSSGEGEPVTGDATTELSQDSKSLKVDEETENTLRVSWKPAP
GKVVNYRVVYRPQGGGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKTGEGKIRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQNFKTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFDSLSKIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPIVSLNIYDIGPTTMRVQWQPVGGA
TGYTVSYEPVKTTESTKPKEMRVGPTVNDVQLTDLLPSTEYEVTVQAVLHDLTSEPATAR
EMTLPLPRPQDVKLRDVTHSTMSVFWEPVLGKVRKYVVRYQTPEEDVKEVEVDRSRTSTS
LKDLLSQTLYTVSVSAVYDEGESPPVTAQETTRPVPAPTNLRITEVTPESFRGTWDHGAS
DVSLYRITWAPFGSSDKMETILNGDENTLVFENLNPNTLYEVSVTAIYPDESESDDLTGS
ERTLRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQT
TTIGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTS
TLNVRWDHAEGNPRQYKLFYAPTAGGSEELVPIPGNTNYAILRNLQPDTPYTITVVPVYN
EGDGGRTSDTARTLVRGLARNVQVYNPTPNSLDVRWDPAPGPVQQYRVVYSPVAGTRPSE
SIVVPGNTRTVHLERLTPDTPYSVDIVALYSDGEGNPSPSQGRTLPRGGPRNLRVFGETT
NSLSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQSDTPYKITVIAV
YEDGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
MEAFVGEVTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQVGWD
TFCVRWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPGSDYGVTVFVQTPN
LEGPGVPINEHTTLKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDN
FNKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKAQALGALQNIRYRG
GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAAFVIQQSGFSVFVV
GVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTS
PGFKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRLQKNAFVNQPTADLHPNGLPPSYT
IILLFRLLPETPNDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTD
EVKTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGFEILGKLLKGEKKS
ATFQIQNFDIVCSPVWTSRDRCCDIPSRRDEVKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGINGAIGPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPG
LPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG
DHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQMISGQMSRFNQMLNQIPNDYHSNR
NQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGNGSPGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQG
YPEPYVPEGGAYLPEREPFIVPVEPERTAEYEDYGADEPAEEQPPHARWRRALPRGPGQR
P
NT seq
9366 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcaggcttcccccagcgctggccgccctgggcgcggccctgctcctgtcttcc
attgaggcagaagttgatccaccttcagacttgaattttaaaattatagatgaaaatact
gtgcatatgtcatgggcaagaccagctgatccaattgtgggttacagaataacagtggac
cctacaacagatgggcccactaaagaatttacccttgcagctagtaccactgaaacttta
ttatcagatcttatacctgaaatagagtatgtggtgacaataacttcatatgatgaagtg
gaagaaagtgtgccagttataggccaactaacaattcaaacaggtgatccgacaaaggca
ggggagaagaaacctggaaaaacagagatacaaaaatgctccgttagtgcctggactgat
ttagttttccttgtggatggctcgtggagtgtgggaagaaataatttcaagtatatctta
gactttattgctgctcttgtgtctgcttttgacattggggaagagaagacaagggttgga
gttgttcagtacagctctgataccaggactgaatttaatttaaaccagtactaccaaagg
gatgaacttcttgctgcaattaaaagaattccatataaaggtggcaacacaatgacaggg
gatgccattgattacttagtcaaaaacactttcttggagtctgctggagcaagagttggc
tttcctaaagtggcaatcataatcacggatggcaaatctcaggatgaggtggaaattcca
gcaagagagcttcgtaatattggagttgaagttttctccttgggtattaaagctgcagat
gcaaaagaactcaaacaaattgcctccacaccttcactgaaccatgttttcaatgtagcc
aattttgatgcaattgtggatattcagaatgagatcatctcccaggtgtgctcaggtgtt
gatgaacaacttggtgaattggttagtggagaagaagttgttgagcctccttcaaatttg
attgccacggaagtctcatcaaaatacattaagctaagttggaatccatctcccagtgca
gtgactggctataaagttctcctcacgccaatgaccacaggaagccgacaccacgctctg
agcgtagggcctcagacaaccacgctcagtattcgcgacctctccgcagacacagagtac
cagatcagtgtttccgccatgaaaggattgacatccagcgaacccatttcaataatggag
aagactcagccaatgaaagttcaagtggaatgctcacgtggtgtggatataaaagctgat
attgtgtttttggttgatggctcctatagtattgggattgcaaactttgttaaagtgagg
gcctttttggaagttctcgcaaaaagttttgaaatttcaccaaatagagtacagataagt
cttgttcaatatagcagagatcctcatactgagttcactttgaagaaatttaccaaggtt
gaagatataattgaagcaataaacaccttcccctacagaggaggctctacgaacactggc
aaagcaatgacttacgtcagagaaaaaatatttgtgcctagcaaaggttcaagaagcaat
gtacccaaagtcatgattcttatcactgatggaaaatcatcggatgctttcagagatcct
gctataaaactaaggaattcagatgtcgaaatctttgctgttggtgtgaaggatgctgtt
cgctcagagttggaagctattgcctctcctcctgccgagacccacgtgttcacagtggag
gattttgatgcttttcagaggatatcttttgaactcacacagtctatctgtcttaggatt
gagcaagaattggcagctataaagaaaaaagcttatgtgcctccaaaggatcttaatttt
tctgaggtgacttcttacagtttcaaaactgactggtctcctgctggagaaaatgttttc
tcgtatcatatcacctacaaggaagcttctggggatgacgaggtcacagtggtggagcca
gcatccagcaccagtgtcgttctgcacaacctgaagccagagaccctgtacttagtcaat
gtgacagcggagtatgaggatggcttcagcattcctgtatctggagaggagaccactgca
gaagtaaagggagcccctcgaaacctgaaagtgacagatgagacaacagacagttttaaa
atcacctggactcaagctccagggaaagttttaaggtatcggattatatatagaccagtt
gctggtggagaaagcaaagaagttaccacccctgccaatcagaggagaagaacattggag
aacctgactccagacacaaaatatgaagtatctgtaattcctgaatatttatcaggacct
ggctctccactgactggaaatgcagccaccgaagaagttagagggaatccaagagactta
agagtttccgaccctacaacatcaagtatgaaattatcttggagtggagcaccaggaaaa
gtgaaacagtatctggtcacatacactccggtggcaggaggtgaaactcaagaggtcact
gtgaggggagattcaaccaatactgtcctgagaggattaaaagaagggacacaatatgcc
ttatctgtgacagccttgtatgcatctggggctggagatgctctttttggagaaggaaca
acacttgaagaacgtggttcacctcgagatttaattactaaagatatcactgacacttca
attggggcttattggacatctgccccaggaatggttcgtggttacagagtctcgtggaaa
tcactttatgatgatgttgaagctggagagaaaaatcttcctggagatgcacttcatacc
atgatagaaaatctgcagcctgagaccaaatacaaaatttcagtttttgcaacttacagc
agtggagaaggtgaacctgttactggagatgccacaaccgaattatcccaagactccaaa
tccttgaaagtagatgaagaaacagaaaatacattgagagtgtcatggaaaccagcacct
ggaaaagttgttaactaccgtgttgtgtatcgtccccaagggggagggaggcaaatggtt
gccaaagtgccacccacagtcacttcaacagtgttaaagcgacttcagccccagaccaca
tatgacatcacagttctcccaatttacaagactggtgaaggaaagattaggcagggatca
ggaacaacagcttctcgatttaaatcacccagaaacctcaaaacatctgacccaaccatg
tcaagcttccgagtgacttgggagcctgcccctggggaagtgaaaggttacaaagtcaca
ttccacccaactggggatgacagaagactgggggagttagtggttggaccatatgacaac
acagttgttttggaagaacttagggcaggtaccacctataaagtaaatgtttttggaatg
tttgatggaggagaaagttcaccactcgttggacaagaaatgaccaccctttctgacaca
actgtaatgccaattttatcctctgggatggagtgtctcacccgagctgaagcagacatt
gtgttgctggtggacgggtcttggagcatcggccgggcaaatttcagaaccgtgagaagt
ttcatttctcgcatcgtggaagtctttgatattggccccaaaagagtacagattgccctc
gctcagtacagtggggaccccagaacagagtggcagttaaatgctcaccgagacaagaag
agcttacttcaagctgtggcaaacttaccctacaaaggaggcaatactctcacaggcatg
gctttgaatttcattcgccaacagaacttcaaaacccaagctggcatgaggcctcgtgct
cgcaagattggtgttctcattactgatggaaaatcacaggatgatgtagaggcaccttca
aagaaacttaaggatgaaggcgtggagctgtttgctattggtattaaaaatgcagatgaa
gttgaattaaagatgattgccactgacccggatgatacacatgcatacaatgtggcagat
tttgattcactgtccaagattgtggatgacctcaccattaatttgtgcaacagtgtcaaa
ggtccaggtgacttggaagcaccttccaatttggttatatccgagcgaacccatcgttct
tttagagtgagctggacacccccttctgacagtgtggatagatacaaggtggaatactat
ccagtttctggagggaaacgccaggaattttatgtgagccgcctggaaactagcacagtg
ctgaaagatctgaagcctgaaactgagtatgttgtaaatgtgtattctgtggtggaagat
gaatatagtgagcctctaaagggcacagaaaaaaccttgccagtccctatagtcagcctg
aatatttatgacattggccctaccaccatgcgtgtgcagtggcagcctgtgggaggagct
accggctacactgtatcatatgaacctgttaagaccactgaatccacaaaacccaaagag
atgcgtgtggggccaaccgtgaacgatgtgcaactgactgacctccttcccagcactgaa
tatgaagtcacagtccaggctgtcttgcacgacctcactagtgaacctgccactgctcgg
gaaatgaccttgcctttgcccagacctcaagatgtgaaactcagagatgtcactcacagc
accatgagtgtcttttgggaacctgtgcttggaaaagtccggaaatacgttgttagatac
caaaccccagaagaggatgtcaaagaggtagaggtggacagatcacggaccagcacttcc
ctcaaagacctcctctcacaaaccctgtacacagtcagcgtttctgcagtgtatgatgaa
ggggagtctcccccagtgactgcccaagaaaccacccgacctgttccagcccccacaaat
ctaaggattactgaagtaacaccagagagtttcagaggaacttgggatcatggagcttca
gatgtgtctctctacagaataacttgggcaccttttgggagctcagataagatggagacc
atcttaaatggagatgaaaatactttggtgtttgaaaacctgaaccccaacactctctat
gaagtttctgttactgccatctatcctgatgagtcagaaagtgatgacctgaccggcagt
gagcgcacattgcgtctgatacctttaacaacacaagctccgaaaagtggcccacgaaac
cttcaggtgtacaatgcaacatctaacagtttgactgttaagtgggatcctgccagtggt
cgtgtgcagaaatacagaatcacttatcagccttcaacaggggaaggcaatgaacaaacg
accacaataggaggacggcagaacagtgtggtcctgcagaaactgaagcctgacactcct
tacacgatcaccgtgtcctccctgtatcctgatggcgaagggggtcggatgacgggaaga
ggcaagactaaacctctgaataccgtgaggaacctaagagtgtatgacccttctaccagc
accttgaatgttcgctgggaccatgcagagggaaatcctcgtcagtacaaactcttttat
gcaccaacagcaggtggctcagaggaattggtaccaatccctgggaataccaattatgcc
attctcaggaatctgcagccagataccccatacaccattacagtagttcctgtttataat
gaaggtgatggaggacgcacatcagatactgcaaggacattggtgagaggactggcaaga
aatgtgcaggtgtataaccccacacccaacagccttgatgttcgctgggatcctgctcct
gggcctgtgcagcagtatcgtgttgtgtattctcctgtggctggcacaagaccctcagaa
tctattgtggtgccaggaaatacccgcacagtgcacctggagcggctgactcctgacaca
ccctattctgtggacatcgtggccctgtactcggatggagagggcaatcccagccccagc
cagggccgcacattgccccgaggtggaccaaggaatctgagagtctttggggagacaacc
aatagcctctctgtagcctgggatcacgctgatgggccggttcagcaatacaggatcatt
tattctcccactgttggtgatccaattgatgaatataccacagtcccaggcagaagaaac
aatgtaatactgcaacccctgcaatctgatactccgtataaaattactgttattgctgtt
tacgaagatggagatggtggccatcttacaggaaatggaagaactgtgggactacttcct
cctcagaatatacacatctctgatgagtggtatacaagattcagggtgtcttgggatcct
tcaccttctccagttcttggctataaaattgtgtataagccagtgggttccaatgagccc
atggaagcttttgttggagaagtgacatcgtacacattacacaatctcaatcccagcacg
acctatgatgtgaatgtttatgctcagtatgattctggactcagtgttcccctgacagat
caaggcaccacattgtatttaaatgtgacagatctgaaaacttaccaggttgggtgggat
acattctgtgtcagatggtcacctcaccgggcagccacctcctacaggctaaaactaagc
cctgcagatggaaccagaggacaagaaattactgtgcgtggatcagaaactagtcattgc
ttcactggcctttcaccaggcagtgattatggtgtcactgtttttgtgcagacaccaaac
ctcgagggaccaggtgtccctatcaatgaacataccaccctgaaaccaacagaagcccct
acagagccacctacacctccaccccctcccaccattccaccagcccgtgatgtatgcaaa
ggggctaaggcagatattgtgttcttgactgatgcctcttggagtattggggatgataat
ttcaacaaagttgtaaaattcatctttaatactgtgggagcctttgatgaaatcagtcct
gctgggattcaggtttcatttgtacagtacagtgatgaggtcaaatctgagttcaagctg
aatacctacaatgacaaggcccaggccctgggagccctccagaatattaggtacagagga
ggaaacacaagaacaggcaaggccctcacatttatcaaggagaaggtcttgacctgggaa
agtggcatgaggaagaatgtccccaaggtgctggttgtggtcacagatggtcggtcgcag
gatgaggtcaagaaggcagcttttgtcatccagcagtcaggattcagtgtctttgtagtt
ggtgtggctgatgtcgactacaatgagcttgccaacattgccagcaaaccaagtgaacgg
catgtgttcattgtggatgactttgaatcctttgagaagattgaggacaaccttattaca
tttgtttgtgaaaccgccacttcaagttgtcctctcatttatttggatggctacacctca
ccaggttttaagatgcttgaagcatacaacctgacagaaaagaattttgcttctgtacaa
ggcgtgtctttggagtcagggtcttttcccagctactcagcttacaggcttcagaagaat
gcctttgtgaatcagcctacagcagacctacacccgaatggacttcctccttcatacaca
attatattactgttcagacttcttccagaaactcccaatgatccttttgcaatttggcaa
atcacagacagagactacaaaccacaagttggagtgattgcagatccttcaagcaagaca
ttatcattctttaacaaagatacaagaggcgaggtgcaaactgttacatttgacacagat
gaagtaaagacgttattttatggaagttttcataaggttcatattgtagtgacttcaaaa
agtgttaagatttatatcgactgctatgaaattatagaaaaagacatcaaagaagctggg
aatatcactactgatggttttgaaattcttgggaaacttcttaaaggggaaaagaagtca
gccacattccaaatccagaactttgacattgtctgcagcccagtgtggaccagcagagac
agatgctgtgatattccctcacggagagatgaagtgaaatgtcctgcccttccaaatgct
tgtacctgcacacaggacagtgttggacctccgggacctccaggccctgcaggaggacct
ggtgccaaaggtcccagaggtgaaagaggtatcaatggagcaattgggccccctggtcct
cgtggagatacaggtcctccaggcccccagggtcctccaggcccccagggacccaacgga
ctctcgattccaggagaacaaggtcgccaagggatgaaaggtgatgctggagaaccggga
cttccaggccgaacaggaaccccaggattaccaggcccgccaggaccaatgggacctcca
ggagacagaggcttcactggaaaagatggtgccatgggacccagggggccgcctgggcca
ccgggaagcccaggctctccaggagtcacaggaccaagtgggaaaccaggaaaacctgga
gaccatggaagaccgggtccatctgggttaaaaggagagaagggtgataggggagacatt
gcttctcagaacatgatgcgagcagttgcaagacaagtctgtgaacaaatgataagtggt
cagatgagcagattcaatcagatgttgaatcagattccaaacgattaccactccaatcga
aaccaaccgggcccgccaggccctccaggtcccccaggcagtgctggtgccagaggagaa
ccagggcctggagggcgaccaggcttcccaggcacaccagggatgcagggaccccctggt
gaacgaggtttgccaggagagaaaggtgaaaggggtaatggttctccaggacctcgaggg
ctgcctggccccccaggtccacaaggagaatctagaacaggtccaccagggtccacaggt
tccagaggtccccctggtccccctggtcgtcctggaaactcaggtatccgaggaccccca
ggtcctcctggatactgtgattcatcccagtgtgccagcatcccatacaacgggcaaggc
tatccagagccgtacgtgcccgagggcggggcctacctgcctgagcgcgagcccttcatc
gtgccggtggagcccgagcggacggcggagtacgaggactacggcgccgacgagcctgca
gaggagcagcctccccacgcgcgctggcggcgcgccctgccccgcggccccgggcagcga
ccctga
DBGET
integrated database retrieval system
