KEGG   Oryctolagus cuniculus (rabbit): 100328641
Entry
100328641         CDS       T03373                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03410  Base excision repair
ocu04140  Autophagy - animal
ocu04217  Necroptosis
ocu04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100328641 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100328641 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    100328641 (HMGB1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    100328641 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ocu03036]
    100328641 (HMGB1)
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100328641 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ocu04147]
    100328641 (HMGB1)
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    100328641 (HMGB1)
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     100328641 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     100328641 (HMGB1)
Exosome [BR:ocu04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   100328641 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_WDHD1 NOA36 HMG_box_5 Nop14
Other DBs
NCBI-GeneID: 100328641
NCBI-ProteinID: NP_001164752
Ensembl: ENSOCUG00000021335
UniProt: G1U2Q5
LinkDB
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgggaggagcataagaagaagcacccagatgcttccgtcaacttctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaagggaaaattt
gaagacatggcaaaggcggacaaggctcgttatgaaagagaaatgaaaacctatatccct
cctaaaggggagacaaaaaagaagttcaaggatcccaatgcgcccaagaggcctccttcg
gcctttttcttgttctgttctgagtatcgccccaaaatcaaaggagagcatcctggcctg
tccattggtgatgttgcaaagaaactgggagagatgtggaataacactgctgcagatgac
aagcagccctacgagaagaaggctgccaagctgaaggaaaagtacgagaaggatattgct
gcataccgagctaaaggaaaacctgatgcagcgaaaaagggagtcgtcaaggctgaaaag
agcaagaaaaagaaggaagaggaggaggatgaagaagacgaagaggatgaggaggaagag
gaagacgaggaagatgaagatgaagaagaagatgatgatgatgaataa

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