Oryctolagus cuniculus (rabbit): 100337729
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Entry
100337729 CDS
T03373
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03082
ATP-dependent chromatin remodeling
ocu05165
Human papillomavirus infection
ocu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100337729
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100337729
09172 Infectious disease: viral
05165 Human papillomavirus infection
100337729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocu03036
]
100337729
Chromosome and associated proteins [BR:
ocu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100337729
Chromatin remodeling factors
NuRD complex
100337729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
PHD-1st_NSD
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
100337729
NCBI-ProteinID:
XP_051706134
Ensembl:
ENSOCUG00000008215
UniProt:
G1TST9
LinkDB
All DBs
Position
8:78997187..79030763
Genome browser
AA seq
1940 aa
AA seq
DB search
MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP
RDPKIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL
GPKKEKKNKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESM
VTATEVAPPPPPVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGG
FGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKGEEEVT
AVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ
WEAKEDNSEGEEILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPL
PEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPE
RQFFVKWQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKN
KDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVE
IQDYDLFKQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLD
ATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLV
SAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKE
ASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLL
TGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKA
DVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCN
HPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLD
LLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADT
VIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVR
PGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDR
NQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRH
HYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRGVCGRPRPPPMGRSTRAVGPAHLPSLP
PDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGNIE
VLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGA
DGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELAEVEENKKMSQ
PGSPSPKTPTPSTPGDTQPNTPAPAPPAEDGIKIEENSVKEEESTEGEKEVKPAAPEAPM
ECAQPSAPASEDEKVVGEPPEGEEKVEKAEVKERTEEPMEMEPKGVADVEKVEEKAAIDL
TPIVVEDKEEKKEEEEKKEVMLQNGETPKELNDEKQKKNIKQRFMFNIADGGFTELHSLW
QNEERAATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAILNEPFKGEMNRG
NFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRFAEVECLAESH
QHLSKESMAGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNI
LSRLANRAPEPPPQQVAQQQ
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggcctgggctcaccgtccccctgctcagcgggcagtgaggaggaggatatg
gatgcacttttgaacaacagcctgcccccaccccacccagagaacgaagaggacccagaa
gaggatttatcagaagcagagactccaaagctcaagaagaagaaaaagcctaagaaacct
cgggaccctaaaatccccaagagcaagcgccaaaaaaaggagcgtttgctcttatgccgg
cagctgggggacagctctggggaggggccggagtttgtggaggaggaggaagaggtggct
ctgcgctcagacagtgagggcagcgactatacccctggcaagaagaagaagaagaagctt
gggcctaagaaagagaagaagaacaaatccaaacggaaggaggaggaggaggaagatgac
gatgacgatgattccaaggagcctaaatcatccgctcagctcctagaagattggggcatg
gaagacattgaccatgtgttctcggaggaggattatcgcaccctcaccaactacaaggcc
ttcagccagtttgtccgacccctcattgcagccaaaaaccccaagattgctgtctccaag
atgatgatggttttgggtgctaagtggcgggagttcagtaccaacaaccccttcaaaggg
agttctggggcttcggtggcagcggcggcagcggctgcagtggctgtggtggagagcatg
gtgacagccaccgaagtggcaccaccacctccccctgtggaggtgcctatccgcaaagcc
aagaccaaggagggcaaaggtcccaatgctcggaggaagcccaagggtagccctcgtgta
cctgatgccaagaagcctaaacccaagaaagtagcacccctgaaaattaagctgggaggc
tttggttccaagcgtaagagatcttcgagtgaggatgatgacttagatgtggaatctgac
ttcgatgatgccagtatcaatagctattctgtttctgatggttccaccagccgcagcagc
cggagccgcaagaaactccgaaccactaaaaagaaaaagaaaggcgaggaggaggtgact
gctgtggatggttatgagacagaccaccaggactattgcgaggtgtgccagcaaggcggc
gagatcatcctgtgtgatacctgtccccgcgcctaccacatggtctgcctggatccggat
atggagaaggctccggagggcaagtggagctgcccacattgcgagaaggagggcatccag
tgggaggccaaagaggacaattcggaaggcgaagagatcctggaagaggtggggggagac
cccgaagaggaggatgaccaccacatggagttctgccgggtgtgcaaggatggcggggag
ctgctgtgctgcgacacctgtccttcgtcgtaccacatccactgcctcaacccgccgctg
cccgagattcccaatggagagtggctctgcccccgctgtacatgtccagctctgaagggt
aaagtgcagaagatcctaatctggaagtggggccagccaccatctcccactccggtgcct
cggcccccagatgctgatcccaacactccttcacccaagcccttggaggggcggccagag
cggcagttctttgtgaagtggcaaggcatgtcttactggcactgctcctgggtgtctgaa
ctgcagttggagctacattgtcaggtgatgttccggaactatcagcggaagaatgatatg
gatgagccaccctctggggactttggtggtgatgaagagaagagccggaagcgaaagaac
aaggaccccaaatttgcagagatggaggaacgcttctatcgctatgggataaaacctgag
tggatgatgatccatcgaatcctcaaccacagtgtggacaagaagggccacgtccactac
ttgatcaagtggcgggacttaccctatgatcaggcgtcttgggagagtgaggatgtggag
atacaggactatgacctgttcaagcagagctactggaatcacagggagctgatgaggggt
gaggaaggacgaccaggcaagaagctcaagaaagtgaagctgaggaagttggagcggcct
cctgagactccgacagttgacccaacagtgaagtacgagcgacagccagagtacctggac
gccacggggggaaccctgcatccctatcaaatggagggcttgaattggctgcgattctct
tgggctcaaggcaccgacaccatcttggctgatgagatgggccttgggaaaactgtgcag
acggctgtcttcctctactccctttataaggagggtcactccaaaggccccttcctagtg
agtgctcctctttctaccatcatcaactgggagcgagagtttgaaatgtgggctccagat
atgtatgtggtaacctacgtgggtgacaaggacagccgtgccatcatccgggagaatgag
ttctcctttgaagacaatgccatccgtggcggcaagaaggcctctcgcatgaagaaagag
gcatctgtgaaattccatgtgctgctgacatcctatgagttgatcaccatcgacatggct
attttgggttctattgactgggcctgcctcattgtggacgaagcccatcggctgaagaac
aatcagtctaagttcttccgggtcttgaatggttactcactgcagcacaagctattgctg
acgggaactccgctgcagaacaacctggaagagctgtttcatctgctcaacttcctcacc
cccgagaggttccacaacttggagggtttcttggaggagtttgcggacattgccaaagag
gaccagattaaaaaacttcatgacatgctggggcctcacatgttgcggcggctcaaagct
gacgtgttcaagaatatgccatccaagacagaactgattgtgcgtgtggagctgagtcct
atgcagaagaaatactacaagtacatcctcactcgaaactttgaagcactcaatgctcgc
ggtggtggcaaccaggtctctctgctgaatgtggtaatggatcttaaaaagtgctgcaac
cacccgtacctcttccctgtggctgccatggaagcccctaagatgcccaatggcatgtac
gacggcagtgccctcatcagagcatctgggaaattgctgctgctgcagaagatgcttaag
aacctcaaggagggcggacatcgtgtcctcatcttctctcagatgaccaagatgctggac
ctgttagaggatttcttggaacatgaaggttacaaatacgaacggattgatggtggaatc
actgggaacatgcgtcaggaggccattgaccgcttcaatgcaccgggtgctcagcagttc
tgcttcttgctttccactcgagccgggggccttggaatcaacctggccactgcagacaca
gttatcatctatgactctgactggaaccctcataatgatatccaggctttcagccgcgcg
caccgcattggacaaaataagaaggtgatgatctaccgatttgtgacccgagcgtcagtg
gaggagcgcatcacgcaggtggcaaagaagaagatgatgctgacgcatcttgtggtgcgg
cctgggctgggctccaagactggatccatgtccaagcaggagcttgatgatatcctcaaa
tttggcactgaggaactgtttaaggacgaagccacagatggaggaggagacaacaaagaa
ggagaagatagcagtgttatccactatgatgataaggccattgagcgactgctggaccgc
aaccaggatgagacggaagacacagagttgcagggcatgaatgaatatctgagctcattc
aaagtggcccagtatgtggtgcgggaagaagagatgggggaggaagaggaggtagaacgg
gaaatcataaaacaggaagaaagtgtggatcctgactactgggagaaattgctgcggcac
cattatgagcagcagcaagaagatctagcccgaaatctgggcaaaggaaaaagaatccgt
aaacaggtcaactacaatgatggctcccaggaggaccgaggtgtgtgtggccggccccgc
cccccacccatgggccgttccactagagcagtgggccccgctcatctgccctctctccct
ccagattggcaggacgaccagtccgacaaccagtccgattactcggtggcctcagaggaa
ggtgatgaagactttgatgaacgctcagaagctccccgcaggcccagtcgcaagggcctg
cggaacgataaagataagccattgcctcctctgttggcccgagttggggggaatattgaa
gtacttggttttaatgctcgtcagcgaaaagcctttcttaatgcaattatgcgctatggg
atgccacctcaggatgcttttaccacccagtggctcgtgagagatctgcgaggcaagtca
gagaaagagttcaaggcctatgtctctctatttatgcggcatttgtgcgagccgggagca
gatggggctgagacctttgccgatggtgtgccccgagaaggcctgtcccgtcagcatgtc
ctcactagaatcggtgtgatgtccttgattcgcaagaaggttcaggaatttgaacatgtt
aatgggcgctggagcatgcccgaactggctgaagtagaggaaaacaagaaaatgtcccag
cctgggtcgccctccccaaagactcctacaccctctactcctggggacacacaacccaat
actcctgcacctgccccacctgctgaggatgggataaagatagaggaaaatagcgtcaaa
gaagaagagagcacagaaggtgaaaaggaggttaaacctgcagcccccgaggcccccatg
gagtgtgcacagccctctgcccctgcctcagaggatgagaaggtcgttggtgaacctcct
gagggagaggagaaagtagaaaaggcagaggtgaaggagagaacagaggagcctatggag
atggagcccaaaggggttgctgatgtggagaaggtggaggagaaggcagcaatagatctg
acccctattgtggtggaggacaaagaagagaagaaggaagaagaagagaaaaaggaagtg
atgcttcagaatggagagacccctaaggaactgaatgatgagaagcagaagaaaaatatt
aagcagcgcttcatgttcaatattgcggatggtggttttactgagttgcactccctttgg
cagaatgaggagcgggcagccactgtcaccaagaagacctatgagatctggcatcggcgg
catgactactggctactggctggcatcatcaaccatggctatgcccggtggcaggacatc
cagaatgacccacgctatgccatcctcaatgagcctttcaagggtgaaatgaatcgtggc
aatttcttagaaatcaagaataagttcctagctcgaaggttcaagctcttggaacaagcc
ttggtgattgaggaacagcttcgccgagctgcctacctgaacatgtcagaggacccttct
cacccttccatggccctgaacactcgctttgcggaagtggagtgtttagcggaaagtcat
cagcacttgtccaaggagtccatggcaggaaacaagccagccaatgcagtcctgcacaaa
gttctcaaacagctggaagagctgctcagtgacatgaaagccgatgtgactcgactccca
gcgaccattgcccggattcctcctgtggctgtgaggttacagatgtcagagcgtaacatt
ctcagccgcctggccaaccgggcaccggagcctccgccacagcaggtagcccagcagcaa
tga
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