Oryctolagus cuniculus (rabbit): 100337883
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Entry
100337883 CDS
T03373
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100337883
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100337883
NCBI-ProteinID:
XP_051700028
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Position
3:complement(153976767..154238174)
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AA seq
1615 aa
AA seq
DB search
MPAPKPRSVMGGLPGNAVACLLGMLLLWSGHGGCQAQRAGCKSVHYDLVFLLDTSSSVGK
EDFEKVRQWVANLVDTFEVGPEHTRVGVVRYSDRPSTAFELGHFSSREEVKAAARRIAYH
GGNTNTGDALRFITARSFSPQAGGRPGDRAFQQVAILLTDGRSQDLVRDAAAAAHAAGIR
IFAVGVGEALREELHEIASEPTSAHVFHVSDFDAIDKIRGKLRRRLCENVLCPSVRIEGH
RFKHTNGESKEITGFDLMDLFNVKEILGQRESGAQSSYVRMGSFPVVRRTEDVFSQGLPD
EYAFVTTFRFRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKAVEYSAVGAVMDAVRVVF
RGTPVSNLFDRDWHKIALAVQAQNVSLYLDCRLVQTLPIEERENIDIQGKTVVGKRLYDS
VPIDFDLQRIVIYCDSRHAELETCCDIPSGPCQVTVVTEPPPPPPPPQLPRPGSEQIGFL
KTINCSCPPGEKGEKGSSGPVGLPGLKGDMGATGLMGAPGPKGEKGDTGRGPFIQGEKGE
KGSMGLPGPPGRDGSKGMRGLPGELGEPGLPGEVGVRGPPGPPGLPGLLGHVGAPGLQGE
RGEKGTPGEKGERGLDGFPGKPGEAGEQGRPGPPGVPGPQGEKGEVGPAGPPGLPGSVVQ
REGLKGEQGAPGPRGHQGPPGPPGAPGLMGPEGRDGPPGLQGLRGKKGDVGPPGIPGPLG
PQGPPGPPGAPGPAGPGGPPGLPGEIGFPGRPGSVGPVGPPGRDGLSGPPGLPGAKGEAG
EQGEDGLPGKPGPRGEAGEQGLAGQPGEKGEAGLPGAPGLPGTRGENGAQGEKGDQGWPG
LKGDRGEKGEAGPAGPPGPPGTTSLLTPHPRMPGEQGPKGEKGDPGVPGEPGPQGHPGDL
GPRGPAGPQGAKGQEGAQGAPGAAGNPGAPGPVGSPGLSGPPGSVGPPGLRGPPGKDGER
GEKGAAGEDGNPGPAGPRGDPGAPGLPGPPGEGKDGEPGLRGSPGLPGPMGTKGDQGAPG
IPGSPGSRGDPGIGVAGPPGPSGPPGDKGPPGPRGLPGFPGPQGPAGQDGAPGNPGERGP
PGKPGPSARLSPEDINLLVKDVCSDCPPGPPGLPGLPGFKGDKGLPGKPGREGPEGKKGD
AGPPGLSGPPGMAGPQGSPGERGTDGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGA
AGPPGIQGPPGKEGPPGPEGPPGIPGLPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGA
RGPPGFKGHTGDSGAPGPRGEPGAMGPPGQEGLPGKDGDTGPIGPQGPQGLRGLPGKNGS
PGSPGDPGPPGSPGQKGSKGENGSPGLPGFLGPRGPPGEAGEKGVPGKEGAPGKPGDPGP
RGERGDPGIKGDKGAPGGKGQPGDPGTPGHKGHTGLMGPQGPPGESGPVGPPGPPGQPGF
PGLRGESPSLDSLRRLIQEELGKQLETKLAYLLAQMPPAHMKSSQGRPGPPGPPGKDGLP
GRAGPVGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPG
YAKDGLPGIPGPQGETGPAGHPGPPGPPGPPGQCDPSQCAYFASLAARPGNVKGP
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgccagctcccaagcccaggagcgtcatgggcggcctcccagggaacgccgtggcctgc
cttcttgggatgcttctgctgtggagtggacacggcggctgccaggcccagcgggcaggt
tgcaagagcgtccactatgatctcgtcttcctcttggacacctcctccagcgtgggcaag
gaggactttgagaaggtccggcagtgggtggccaacctggtggacaccttcgaggtgggc
cccgagcacacccgtgtgggcgtggtgcgctacagcgaccggccctccacggcctttgag
ctaggccacttcagctcccgtgaggaagtgaaggcggccgctcggcgcatcgcctaccac
ggcggcaacaccaacaccggcgacgcactgcgcttcatcaccgcccgcagcttctcgccg
caagccggtggccgccccggggaccgtgccttccagcaagtggccatcctgctgaccgat
ggccgcagccaggacctggtgcgcgacgcggcggccgcagcacatgcagccggcatccgc
atcttcgccgtgggtgtgggcgaggcactgcgggaagagctgcatgagatagcctcggag
cccacgtctgcgcacgtcttccacgtgtctgacttcgacgccatcgacaagatccgtggc
aagctgcggcgccgcctgtgtgagaatgtgctgtgccccagtgtgcgcatagaaggccac
cgcttcaagcacaccaatggagagtccaaggagatcacaggttttgacctgatggatctg
ttcaacgtgaaggaaatcctggggcagagagagagcggagcccagagttcctatgtccgc
atgggatccttccccgtggtgcgaaggactgaggacgtgttttcccagggcttgcctgac
gagtatgcctttgtcaccaccttccggttccgcaagacgtctcggaaagaagactggtac
atctggcaggtcattgaccagtacggcatcccacaggtctccatccggctggacggagag
aacaaggctgtggagtacagcgccgtgggtgccgtgatggatgccgtcagagtggtcttc
cgaggaacgccggtcagcaacctctttgaccgggactggcacaagatcgccctggccgtc
caggcccagaacgtctccctgtacctcgactgcaggctggtgcagacgctgcccatcgag
gagcgggagaacattgacatccagggcaagaccgtggtgggcaagcgcctctatgacagt
gtgcccatcgactttgacctgcagcggattgtgatctactgtgactcccggcatgcagaa
ctggagacctgctgtgacatcccctccggtccgtgccaagtgactgtggtgacggagcct
ccacctccacctccacccccgcagcttcccaggcctggcagtgaacagattgggtttttg
aagaccatcaactgctcctgtccacctggagaaaagggtgaaaagggctccagtggcccc
gtgggactccctggtctgaagggggacatgggagccactggactgatgggtgctcctgga
cccaagggagagaaaggtgacacgggcaggggaccttttatccaaggagaaaagggagag
aagggttccatgggcctgcctggaccccctgggagagacggcagcaaaggcatgagaggg
ttgccgggagagctgggggagccgggcctgcctggagaagtgggcgtgcggggaccccca
ggaccacctggactgcccgggcttcttggacacgttggagctcctggtctccaaggagaa
cgaggggaaaaaggaacaccaggagaaaagggggagcgaggcctggatggattccccggg
aagcctggggaggcaggagagcagggaagacctggccctcctggtgtgccaggaccccag
ggagagaagggtgaggtgggacctgcaggacctcctgggttaccgggctctgtggtgcag
agagagggcctgaagggagaacagggcgctccaggaccaagaggacaccaaggcccacct
gggccaccaggagctccgggtctgatgggtccagaaggcagagacggaccccctggctta
caaggtctccgagggaagaaaggtgacgtgggcccacctggaatccctggaccgttggga
ccgcagggtcccccaggaccgcccggagccccaggccctgctggaccaggaggccccccg
ggtttgcctggagagattggcttcccaggaagacctgggtctgtggggcctgtggggcca
cctggaagagatgggctgagtggacccccaggcctgccaggagccaagggagaagcagga
gaacaaggggaagacggcctgcctgggaagccggggcctcggggagaagctggggaacaa
ggtctcgcgggccagcctggagagaagggagaagcaggcctcccaggagccccgggcctc
ccgggcacgcgaggagagaatggagctcagggtgaaaaaggtgaccagggatggccggga
ctgaaaggtgaccggggtgaaaagggcgaagctggtcctgcagggcccccggggccgcct
gggacgacatccctgctcacaccgcacccgaggatgccgggagaacaagggcccaaagga
gagaagggtgatccgggagtgcctggggagccgggaccgcagggccatcctggagacctg
gggcctcggggccctgctggaccgcagggtgccaagggacaagaaggagcacaaggggct
cccggagcagctggcaaccctggcgctcctggacctgtgggctcccctggcctcagcggc
cccccgggaagtgtgggtcctcctggcctcagaggcccccctggaaaagacggggagcgc
ggtgagaagggagcagcgggggaagatgggaacccagggccagctggcccccgtggggac
cccggagctccgggactacctgggccgcctggcgaaggaaaggacggagagccgggactc
cgtggctcacctgggttacctggacctatgggaacaaagggagaccaaggagcacctggg
atccctggatctcccggcagccgtggcgacccaggcatcggggttgctggccctcctggc
ccttccggaccaccaggagacaaaggacccccgggacctcgaggcttacccggattccct
ggccctcagggaccagctggccaggatggtgcaccaggaaatccaggggaaagaggccct
cctgggaagccaggcccctccgcacgcctgtctccagaggacataaatctcttagtgaag
gacgtgtgcagcgactgccctcccggccccccaggcctccctggcctgccaggttttaaa
ggggacaaaggcctcccaggaaagccagggagagaaggcccggaggggaaaaagggagat
gctgggccccctggcctctcagggcccccgggaatggctggaccgcagggaagtccagga
gaacgtggtactgatggtgaggttggacagaaaggtgatcagggtcatcctggagttcca
ggcttcatggggcccccagggaacccagggccaccaggagctgatggaattgcaggagct
gctggaccaccaggaatccaagggccaccagggaaagaaggaccgcctggccccgaaggc
ccacccggaatccctggacttccaggagaagaaggcaaagagggcagagatggaaaacca
ggtcctcctggagagccgggcaaagctggagagccgggtctgccaggaccagagggtgcc
cgagggccgcctggcttcaagggacacacgggcgattcgggtgcacctggtcccaggggc
gagcctggtgccatgggaccccctggccaggaggggctaccaggaaaagatggtgatact
ggacccattgggccacagggtccccaaggactgagaggcctaccgggtaagaatggatca
cctggctctccaggagaccccggccctccaggaagccctggccagaaaggaagcaaagga
gaaaacggaagcccgggccttcctggcttcctgggtccccgtgggcctccaggagaggcg
ggagagaaaggagttccaggcaaggagggtgccccagggaagccgggagacccaggaccc
cgaggagaaaggggagatcctgggatcaaaggggacaaaggagccccaggtgggaagggc
cagcctggggaccctggaaccccaggccacaaaggccacacaggcctgatgggcccacaa
ggaccgcctggagagagcgggccagtggggcctccaggacccccgggccagccaggattt
ccagggctgaggggggagtctccctccctggacagcctgcggcggctcattcaggaggag
ctcgggaagcagctggaaaccaagcttgcctacctgctggcccagatgcccccagcacac
atgaagtcatctcaaggcagacccgggcctccggggcccccaggaaaggatgggcttcca
ggccgggcaggccccgtgggcgagccaggcaggccgggccaggggggtctggaaggaccc
tctggaccaataggtcccaaaggtgagcgaggagctaaaggtgacccaggtgcacctgga
gttggcctccgaggcgagatgggaccccctggaatcccaggtcaaccaggcgaacctggg
tatgctaaagatggactccctgggattcctggccctcaaggggagacaggaccagctgga
catcctggccccccgggtccacctggcccccctggccagtgtgacccctcccagtgtgcc
tactttgccagcctcgctgcccgacctggtaatgtgaagggcccctag
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