Oryctolagus cuniculus (rabbit): 100338520
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Entry
100338520 CDS
T03373
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100338520
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
100338520
3'-5' decay
Other 3'-5' decay factors
100338520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PAM2
PhoH
zf_CCCH_4
zf-CCCH_4
AAA_22
Mov-10_helical
AAA_16
AAA_7
Bac_DnaA
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
100338520
NCBI-ProteinID:
XP_051681796
Ensembl:
ENSOCUG00000008856
LinkDB
All DBs
Position
19:47733314..47915450
Genome browser
AA seq
1942 aa
AA seq
DB search
MEDSRAEKSCEQACESLKRQDYEMALKHCTEALLSLSQSSMAEVPGPCPVEIERIKMESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGEGAFRAMLCCMQLKGKLQLVSAVLAKSLT
GESLNGMVTKDLTRLKTLLTETETATSNVLSGYHVEDLDEGSCNAWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYVETLI
EKWMNSLSPEKVLSECIEGVKVEHDPDLSVTVSTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSSKTIIDFEPNE
TTDLEKSLLVRYQIPLSADQLFTQSVLDKSLTKINYQSRLHDLLYIEEIAQYKEVSKFNL
KVQLQILASFMLTGVSGGAKYAQDGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVP
NEKLVQTQGTKEKVFEATIEEKTKEYIFLRISRECCEELHLRPDCDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNSLHG
ITSEQIKAQLEALELKKTYVLNPLAPEFVPRALRLQHSGSISKQPPSPPKGKSLHHTQND
HFQSDGIVQPNPSVLIGNPIRAFTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQTHGRGSPIPYGLGHHPPV
SIGQPQSQHPEKDQHEQNRNGKSDTNNPGPEINKIRTPEKKPTEPKQVDLESNPQNRSPE
SRPGVIYPNTKFPRKDNLNPRHINLPLPTPHAQYAIPNRHFHPLPQLPRPPFPIPQQHTL
LNQQQGSLPEQPNPMPPQPNQLAQQQSPLDQQSPQPAPPLSPAYQAGPSPAFFSAAAAQR
PPSPPAEAVLPEQQPPPLLHGGHSPLRAIAQPGPMLPPHLNNFLEENPPGLPLGEALDRI
HGSVALETLRQQQARLQQWNEHHAFLSQGSMAYPHHHHPHLQHLPQPSIGLHQPPVRPDW
KGPGGAEEAAETTYTRFQDLLRELSHREQSETRELAEMPPPQSRLLQYRQVQTRSPPAAP
SPPSSTDHSGHFSNFNDNSRDLEVANSPAFPQRLPPQMFSSPFSLPSEHMAPPPLKYLAP
DGAWTFANLQQNHLIGPSFPYGLPPLPHRPPQNPFVQIQNHQHAIGQEPFHPLSSRTVSS
SSLPSLEEYEPRGPGRPLYQRRISSSSVQPCSEEGSAPRDSLAPCRELQDHANPASLNFS
SPESWVNATSSAPYQNIPCNGSSRTTQPRELIAPPKPAKPPEEPAEPESLEVSSPFNYSV
LQHLGQFPPLLPHKQVAEAAGGGPQSAAASKPAMSYASALRAPPKPRPPPEQAKKSSDPL
SLFQELSLGSASGGNGFYSYFK
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagcagagctgaaaagtcatgtgaacaagcgtgcgaatcactgaagaggcag
gactatgagatggccctcaagcactgcacagaggccctcctttctctcagccagtcctcc
atggctgaggtcccagggccatgcccagtggagatagagcgcatcaagatggagagtctt
ctctacagaattgcctcatttttgcaactgaaaaactatgggcaagctgatgaagattgt
aggcatgtgctgggagaaggactggccaagggagaaggtgcctttcgggcaatgctttgt
tgcatgcagctgaaagggaagctccagctcgtctctgccgtcctcgccaagtctctgact
ggagagtccctgaatgggatggtaacaaaagatctgacaagactaaaaacacttctcaca
gaaacagagacagcaactagtaacgtcctctctggctatcacgtggaagacttagatgag
gggtcttgcaatgcttggcatttccgcccaccacctcggggaatcacgagtagcgaggaa
tatactctgtgtaaaagatttttagagcaaggaatctgtaggtatggtgcccagtgtact
tcagcacattcccaggaagaactagcagaatggcagaagagatacgcgtcacgattgata
aaactgaaacagcaaaatgagaataaacaactctcaggcagttacgtggaaaccttaata
gaaaagtggatgaattcgttatctcctgagaaagtgcttagtgagtgtattgaaggggtg
aaggttgaacatgatcctgacctgtccgttacggtcagcaccaaaaaatcccaccagaca
tggacctttgcactcacttgtaagcctgcaagaatgctgtatcgtgtagcattgctttat
gatgctcatcgtcctcattttagtatcattgcaatatctgccggagatagtactacccag
gtatcacaagaagtcccagaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggaaccagtactcatgcaaagagtaatg
attgatgcagcttctacagaagatcttgaatatctgatgcatgcaaagcagcagctggtg
accacagccaagcgctgggactcttcttctaagactatcatagattttgaacctaatgag
actactgatttggagaagagccttcttgtcagataccagattccactgtctgctgaccag
ctgtttacccagtccgttttagacaaatccttgaccaagatcaactatcagtcgcggttg
catgacctcctgtatattgaggagatagcccagtacaaggaagtcagcaagttcaacctt
aaagtgcagttgcagattctagcaagcttcatgctcactggagtttctggaggggcaaag
tatgctcaggatggacagcttttcggtcgttttaagcttactgaaacactttctgaagat
actttggctggacgactggtgatgaccaaagtcaatgccgtttacttattgccagtccct
aatgagaagttagtacagacgcagggaaccaaagagaaggtttttgaagctaccattgaa
gaaaaaacaaaggaatatatatttttaaggatatccagggaatgctgtgaagaacttcat
ctccggcctgattgtgacacacaggtggaacttcagtttcagttaaatcgattgcctctc
tgtgaaatgcattatgcactagacaggatcaaggacaatggggttttgtttccagacatc
agtatgactcctacgataccgtggagtcccaacagacagtgggatgaacagttggatcct
cgactaaatgcaaaacagaaagaggctgttctggccattaccactccactttcaatacag
ctgccacctgttctaatcatcggaccctacgggacaggcaaaaccttcactctcgctcag
gccgtcaagcacatactgcagcagcaggagactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtatatttcagaaatcgctgggtgaagactgtccaccca
gttgtgcatcagtactgtttgatctcaagcgcacattccacctttcagatgccacagaag
gaagatattcttaaacaccgagtggtggttgttacattgaatacttcccagtacctctgt
caattggaccttgaacctgggttttttacgcatattctattagatgaagctgcccaggcc
atggagtgtgaaaccattatgcctctagcattagcaactaaaaacactcggattgtcttg
gctggtgatcacatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcatgtttcgttacttgatcgactctatgagcattaccctgctgagtttccatgtagg
atcctcctgtgtgagaactaccgctcccatgaagctatcatcaattacacttctgagctt
ttctatgagggtaaactgatggccagtgggaagcagccagcacataaggatttctaccca
ttgactttctttacagcacgaggggaggacgtacaagagaaaaatagcacagctttttac
aataatgcagaggtatttgaggtggtggaacgtgtggaagagttaagaaggaagtggcca
gtggcgtgggggaagctggatgatggcagcattggtgtggtgactccatacgctgatcag
gtgtttagaatccgtgctgaacttcgaaaaaagaggttatccgatgttaatgtggaaagg
gtgctcaatgttcaaggaaagcagttcagagttttgtttcttagcacagtacgtacaaga
catacttgtaaacataaacagacaccaattaaaaagaaagagcaacttctggaagattcc
acagaggacttagattatggttttttgtctaactacaagcttctcaatactgccatcacg
agagcacagtccctggttgctgtggtgggtgatcccattgctctgtgctctattggaaga
tgcaggaaattctgggagcgtttcattgcgctgtgccatgaaaacaacagcctgcatggg
atcacttcggagcagatcaaggctcagctggaggctctagagctgaagaagacgtatgtg
ttgaacccgctggcccctgagtttgtcccccgggctctccgactgcagcattcaggcagc
atcagcaaacagccgccgtcaccacccaaggggaaaagcctccatcatacccagaatgat
catttccagagtgatgggattgttcagcccaatccttccgtacttattggcaatcctatt
agagcatttactcctccaccccctcttggacctcacccaaatttgggaaaatctccaagc
cccgttcaaagaatagatcctcacactgggacgagtattctttatgtacctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtaccatggacaggataccagggtagg
tttgcagttgatcctcgaattattacccatcaggcagcaatggcctacaatatgaaccta
ctacagacacacggacggggctctcctataccttatggccttggacatcaccctcctgtc
agcatagggcagccacaaagtcagcatccagagaaggatcagcacgagcagaatcgaaac
ggtaagagtgatacaaacaatcctggacctgaaattaataagattcgaacaccagagaaa
aagcctacagagccaaagcaggttgatttggaatcaaatccacagaacagaagtccagaa
tcgcgtcctggtgttatctatcccaataccaaatttcctcgcaaagataatctcaacccc
agacacataaatcttcctcttcccactccccatgcacagtatgcaatccctaatcgccac
tttcatccccttccccagctaccgagacccccgttcccaattccgcagcagcacaccttg
ttaaatcagcagcagggtagtttgcctgagcagccaaatccgatgccaccccagcccaac
cagcttgcccagcagcagagtccgctggaccagcagagcccgcagccagctcctccgctc
tcccccgcgtatcaggcggggcccagccctgctttcttcagtgctgccgctgcgcagcga
cccccgtcgcctcccgccgaggctgtgctgcccgagcagcagccccctcccctgctgcac
ggaggccacagccctctcagagccattgcccagcctggccccatgcttcctccgcacctg
aataacttccttgaggagaaccctccaggacttcctttaggggaggctttagatcgcatc
catgggagcgtagctctggagacgctgaggcagcagcaagcacggttacagcagtggaac
gagcaccacgccttcctgagtcagggcagcatggcgtacccacaccatcaccatcctcac
ctccagcacctccctcagccgtccatcggattacatcagccgcccgtgaggccagactgg
aagggtcccggcggtgccgaagaagcagcagagaccacgtacaccaggtttcaagactta
ctcagagagctgtcccatcgtgagcagagtgagacacgggaactagctgaaatgccccca
cctcagtcgagacttctgcaatacagacaagtccagaccagaagcccaccagcagccccc
tctcccccatccagtacagaccacagtggccacttttctaactttaatgacaacagcaga
gaccttgaagtagccaacagcccagcatttccgcagcgcctcccaccccagatgttcagc
tcgcctttctccctgccttcagaacacatggcccctccccccttgaagtacctagcacct
gatggagcatggacttttgctaacttgcaacagaatcacctaatagggccgagctttccc
tatggcctacctccgttgcctcaccggccaccacaaaacccttttgtacaaatccagaat
catcagcatgctatcggtcaggagccttttcacccattgtcatctcgaacagtatcttct
tcttcgctccctagcttagaagagtatgagcccagaggccccggtcggcccttgtaccaa
agaagaatctcatctagctcagtccagccttgttctgaagaaggaagcgccccccgggac
agtctggctccgtgcagagagctccaggaccatgctaacccagcttctctcaacttctct
tccccggagtcctgggtcaacgccacctcatctgccccctaccagaacattccgtgcaat
ggatccagcaggacaacccagcccagagagttgatagctccgcccaagcccgccaagccc
cccgaggagccagccgagcccgagagcctcgaggtgtccagccccttcaactacagcgtg
ctgcagcacctcggccagttcccgccgctgctgccgcacaagcaggtggccgaggcggcg
ggcggcggcccgcagagcgcggcggccagcaagccggccatgtcctacgccagtgccctg
cgcgccccgcccaagccgcggccgccgcccgagcaggccaagaagagcagcgacccgctg
tccctgttccaggaactgagcctgggcagcgcgtcgggcggcaacggcttctactcctac
tttaaatag
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