Oryctolagus cuniculus (rabbit): 100338894
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Entry
100338894 CDS
T03373
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04612
Antigen processing and presentation
ocu05145
Toxoplasmosis
ocu05152
Tuberculosis
ocu05164
Influenza A
ocu05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
100338894
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
100338894
09171 Infectious disease: bacterial
05152 Tuberculosis
100338894
09174 Infectious disease: parasitic
05145 Toxoplasmosis
100338894
09163 Immune disease
05340 Primary immunodeficiency
100338894
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ocu01001
]
100338894
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocu04054
]
100338894
Enzymes [BR:
ocu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
100338894
Protein kinases [BR:
ocu01001
]
Serine/threonine kinases: Other
TAF1 family
100338894
Pattern recognition receptors [BR:
ocu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
100338894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
Motif
Other DBs
NCBI-GeneID:
100338894
NCBI-ProteinID:
XP_008255937
Ensembl:
ENSOCUG00000006208
LinkDB
All DBs
Position
6:4530796..4576682
Genome browser
AA seq
1206 aa
AA seq
DB search
MDHFQAILPRVQMLLSCHGQREVRALLDSLLQEELLSREYHCALLHEPDGEALARKISLT
LLEKRDLDVALLGWARSGWQVPAAERSPEHGDLGGGGSCATMELGPLEGKYLELLNSDVD
PLRLYHFYDQIDLAAGEEMELCSEPYTDTINCEQFSRLLCDIEGDEETREAYANIAELDQ
YVFQDSQLEGLSRDIFIEHMGSDDVVGENAEVPAEAVQKSQKRPFPDECPADPKHRRLAE
PPTVPVVTGSFLVGPVMDSPALPCPPPPALLNQEPARSQTHQEGAVQKPVPPTSSSSNCL
NLPAGPMQLIPTVPALPQWLWQISGAGTGVSSIFIYHSKLPPASQASPPRGPAVHSLPKS
PDRPGSTSPFAPSAAELPSMPEPALTSRTNETEDTVLPTRCQEAPEVSKWPEPVRQLCRS
LQDKFQAEPAGPDGIQVEVDLVRAQLERSGSKSQDRELATLDWAERQLAHGGLAEVLAAS
NPRQPRETQIIAVLGRAGQGKSHWARAVGRAWACGRLPQYDFVFHVPCRCLDRPGDDFRL
CDLLVSPGPPAPAADDEVFGHILRRPERVLLILDAFEEVEAQDSLLHGGAGGPGPTEPCS
LRGLLAGLFQRRLLRGCTLLLTARPRGRLGQSLSKADALYEMTGFSAEQAHAYVVQYFER
CGAPEHQERALALLQERPFLVSHSHSPTVCRATCQLAQALLKQGCGARLPCTLTGLYVDL
LGPAASDGPPGALVALARLAWELGRRHQSSLQESQFPSAELRTWAVARGLVQPAPGAAET
ELAFSSFLLQCFLGAVWLALSSEIKNKELPQYLALTPRKKRPYDNWLEGVPRFLTGLIFQ
PRARCLGALVGPEAAAAVDRKQKVLARYLKRLQPGTLRARRLLELLHCAHEAEEAGIWQH
VVRELPSRLSFLGTRLTPADTHVLARALEAAGRDFSLDLRSTGVDPGGLGSLVGLSHVSS
FRANLSDTVGLWEALQQRGETKLLQAAEEKFTLEPFRAQSLKDVEELGHLVRTQRMGRAS
ADEAGGLPAVRDLKKLEFALGPTLGPQAFPKLVRILTAFCSLQHLDLDSLSENKIGDEGV
AQLSATLPQLKALETLNLSQNSITDLGACTLAEALPALASSLLRLSLYNNCICDAGAESL
AHVLPRMAALRVLDVQYNKFTAAGAQQLAASLRKCPHVETLAMWTPTIPFGVQEHLQQLD
SRISLR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggaccacttccaggccatcctgcctcgggttcagatgctgctgtcctgccatgggcag
agggaagtgcgggctctcctggacagcctgctacaggaggagcttctctccagggagtac
cactgcgccctgctccacgagcctgatggggaggcgctggccaggaagatctccctgact
ctgctggagaagagagacctggacgtggccctcttaggttgggcccggagcgggtggcag
gttccagcagcagagaggagccctgaacacggggaccttggcggcggcggatcgtgtgcc
accatggaactggggcctctggaagggaagtacctggagcttctcaacagcgatgttgac
cccttgcgcctctaccacttctacgaccagattgacctggctgcgggagaagagatggag
ctgtgctcagaaccctacacggacaccatcaactgcgagcagttcagcaggctgctgtgt
gacattgaaggtgacgaagagaccagggaggcttacgccaacatcgcggaactggaccag
tatgtgttccaggactcccagctggagggcctgagcagagatattttcatagagcacatg
ggatcagatgacgtggttggtgagaacgcagaggtgcccgcggaagcagtacagaaaagt
caaaagagacccttcccggatgagtgcccggcagatccgaagcacaggaggctagctgaa
ccccccactgtgcccgtggtgaccggcagcttcctggtggggccagtgatggactccccc
gctctgccctgcccaccgccacctgccctgctcaaccaggagccagcgcgcagccagacc
caccaggagggagccgtccagaagcctgtgccccccaccagctcctcctcgaactgcctg
aacctccctgctggccccatgcagctcatccccactgtccccgctctgccccagtggctc
tggcaaatctcaggggctgggactggcgtctccagtatattcatctaccacagcaagctg
cccccggccagccaagcgtcccctcccagaggccctgctgtgcacagcctcccgaagtcc
ccagaccggcctggctccaccagccccttcgctccgtctgcagctgagctgcccagcatg
cccgagccagccctgacctcccgcacaaacgagacagaggacactgtgctccccacacga
tgccaagaagccccggaggtctccaaatggcctgagccggtgcggcagctctgccgctcg
ctgcaggacaagttccaggctgagcccgcaggcccggatggcatccaggtggaggtggat
ctggtgcgggcgcagctggagaggagcggcagcaagagccaggacagggaactggccacg
ctggactgggccgagaggcagctggcccacgggggtctggccgaggtgctggctgccagc
aacccccggcagccacgagagacacagatcatcgccgtgctgggcagggccgggcagggc
aagagccactgggcccgggcggtgggccgggcctgggcctgcggccggctgccgcagtac
gacttcgtcttccacgtgccctgccgctgcctggaccgtcccggggacgactttcgcctg
tgcgacctgcttgtgtccccgggcccgccggccccggccgcagacgacgaggtctttggc
cacatcttgaggaggcctgagcgcgtcctgctcatcctggacgccttcgaggaggtggaa
gcccaggacagcctcctgcacggcggcgcgggcggccccgggcccacggagccctgctcc
ctccgggggctgctggccggcctcttccagcgcaggctgctccggggctgcaccctgctc
ctcaccgcccggcctcggggccgcctgggccagagcctgagcaaggccgacgccctgtac
gagatgactggcttctcggccgagcaggcccacgcctacgtggtacaatactttgagcgc
tgcggagccccagagcaccaagagagagccctggcactgctgcaggagcgcccgtttctg
gtcagccacagccacagcccaaccgtgtgccgggcgacgtgccagctcgcacaggccttg
ctgaagcagggctgcggggcccggctgccctgcacgctcacaggactctacgtggacctg
ctgggccctgcggccagcgacggccccccaggggccctggtggcactggccaggctggcc
tgggagctgggccgcagacaccaaagctccctgcaggagagccagttcccgtcggcggag
ctgaggacctgggctgtggccagaggcttggtgcagccagccccaggcgccgcggagacc
gagctggctttctccagcttcctcctgcagtgcttcctgggggctgtgtggctggcgctg
agcagcgagatcaagaacaaggagctgccgcagtacttggcactgaccccgaggaagaag
aggccctacgacaactggctggagggcgtgccgcgcttcctcaccgggctgatcttccag
ccccgcgcccgctgcctgggagccctggtggggccagaggcagccgccgcggtggaccgg
aagcagaaggtgctcgccaggtacttgaagcggctgcagccagggacgctgagggcgcgg
cggctgctcgagctgctgcactgcgcccacgaggccgaggaggccgggatctggcagcac
gtggtgcgcgagctcccctcccgcctctccttcctgggcacgcggctcacgcccgctgac
acacacgtgctggcccgggccttggaggccgccggccgggacttctctctggacctccgc
agcaccggtgtggaccccggcggactgggcagcctcgtgggactcagccacgtcagcagc
ttcagggccaacttgagcgacacggtggggctgtgggaggccctgcagcagcgtggggag
accaagctactccaggcagcggaagagaaattcaccctggagcctttcagggcccagtct
ctgaaggatgtggaggagctcggccacctcgtgcggacccagaggatgggacgcgcctct
gcagacgaagccggcggactccccgccgtccgggacctgaagaagctggagtttgcgttg
ggccccaccttgggcccccaggcctttcccaaactggtgaggatcctcacggccttctgc
tcgctgcagcacctggacctggactccctgagcgagaacaagatcggggacgagggcgtc
gcacagctgtcggccaccctccctcagctgaaggccctggagacgctcaacctgtctcag
aacagcatcaccgacctgggcgcctgcacgctcgccgaggccctgcccgcgctcgccagc
tccctcctcaggctgagcttgtacaataactgcatctgcgacgcgggagccgagagcctg
gcgcacgtacttccacgcatggcggccctgcgggtgctggatgtccagtacaacaagttc
acggccgccggggcccagcagctcgccgccagcctgaggaagtgccctcatgtggagacg
ctggcgatgtggacgcccaccatcccattcggcgtccaggagcacctgcagcagctggac
tcccggatcagcctgcgatga
DBGET
integrated database retrieval system