KEGG   Oryctolagus cuniculus (rabbit): 100339666
Entry
100339666         CDS       T03373                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100339666
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100339666
   03036 Chromosome and associated proteins [BR:ocu03036]
    100339666
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100339666
   Coactivators
    SAGA/TFTC/STAGA complex
     100339666
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     100339666
    STAGA complex
     100339666
    TFTC complex
     100339666
    SAGA complex
     100339666
    SLIK complex
     100339666
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st DSE1_N Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_Aladin CFAP251_N Beta-prop_WDR41 PAC11 Beta-prop_IFT140_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_NOL10_N Beta-prop_VPS8 Beta-prop_DCAF4 Tricorn_2nd Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_EIPR1 ASA1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_WDR19_1st PEP5_VPS11_N PROPPIN Beta-prop_IP5PC_F Ge1_WD40 WD_LRWD1 TRM82_WD Nbas_N
Other DBs
NCBI-GeneID: 100339666
NCBI-ProteinID: XP_002717439
Ensembl: ENSOCUG00000010697
LinkDB
Position
16:complement(47266348..47290807)
AA seq 589 aa
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA
TPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQTIQDIHSNLKLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLTLHIHLDVQPAKRTDYQLYTSGSSSRSESNGLEPPDMPSPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSK
KLKSEPHQVDVSRIHLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMTIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIR
NTYCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgagtgcgcaccgaacagattcagatggcagtgtcctgctacctcaaacgccgg
caatacgtggactcagacggtcccctgaagcaaggactgcggctgtcccagactgccgag
gagatggcggccaatctcacagttcaatccgaatctggttgtgccaatatagtgtctgca
accccttgccaggcagaaccccagcaatatgaagtacagtttgggcgactgaggaatttt
ctcactgattctgattcccagcatagccatgaagtgatgcctctcctctatcctctcttt
gtctacctccatctcaacctggtccagaacagtccgaagagcacagtggaaagtttttac
agccgcttccatggaatgtttctgcagaacgctagccagaaggatgtcattgagcagcta
cagaccactcaaaccatccaggacatccattctaacttaaagcttcgagcattcctagat
aacaagtacgtggtccgtctccaggaagacagctacaactaccttatccgctacctccaa
agtgacaacaatactgccctgtgcaaagtcctcaccttacatattcatcttgatgtgcag
cctgccaagagaacagactaccagctctacaccagtggtagctcttcccgcagcgagagc
aacggcttagagccccctgacatgcccagtcctattctgcaaaacgaggccgccctggag
gtcttgcaggagagcattaagcgtgtcaaggatgggcctccctccctcactaccatctgc
ttctatgccttctacaacacagagcaactgttgaacactgcagaaatctcccctgatagc
aaactgcttgctgctgggtttgacaactcctgtataaaactttggagtttacgatccaag
aagttaaaatcagagcctcatcaagtagacgtgtcccgcatccacttggcttgtgatatc
ctggaggaagaggatgatgaagatgataatgcaggcacagagatgaagatactgcgggga
cactgtggaccagtgtacagcacaaggttcctcgcagacagctcagggttgctctcttgt
tctgaagacatgaccatcagatactgggacctggggagtttcactaacactgtgctgtat
caaggacatgcctatcctgtgtgggacctggacatcagcccctatagcctgtacttcgcc
agcgggtcccacgaccgcaccgccaggctatggtcatttgatcggacgtacccgctgagg
atatatgcaggacacctggcagatgtggactgtgtcaaattccaccccaattcaaactac
ttagctacaggctctaccgataagactgtccgactgtggagcgcccagcaggggaactcg
gtgaggctcttcacgggccaccgcggccccgtgctttctcttgccttttctcccaacggt
aagtacttggcatctgctggcgaggaccagcggttgaagctgtgggacttggcctctggg
accctttttaaggaactgagaggccacacagacaatatcaccagcctcaccttcagtccg
gacagcggcttgatcgcctctgcctccatggacaactctgtgcgcgtctgggacatcagg
aacacttattgcagcacgcctgccgacggctcctccagcgagctcgtgggcgtgtacact
gggcagatgagcaacgtcctgagcgtgcagttcatggcctgtaacctccttctggtgact
ggaatcacacaagaaaatcaggaacattaa

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