Oryctolagus cuniculus (rabbit): 100339915 Help Entry 100339915         CDS       T03373                                  Name (RefSeq) collagen alpha-6(VI) chain   KO K06238   collagen type VI alpha Organism ocu  Oryctolagus cuniculus (rabbit) Pathway ocu04151   PI3K-Akt signaling pathway ocu04510   Focal adhesion ocu04512   ECM-receptor interaction ocu04820   Cytoskeleton in muscle cells ocu04974   Protein digestion and absorption ocu05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:ocu00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     100339915   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100339915  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100339915   09142 Cell motility    04820 Cytoskeleton in muscle cells     100339915  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     100339915  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     100339915  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:ocu04147]     100339915    00536 Glycosaminoglycan binding proteins [BR:ocu00536]     100339915 Exosome [BR:ocu04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    100339915 Glycosaminoglycan binding proteins [BR:ocu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100339915  Hyaluronan   Extracellular matrix or blood plasma proteins    100339915 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  VWA VWA_2 Collagen VWA_3 vWA_SIBA-E Radical_SAM Integrin_beta Motif Other DBs NCBI-GeneID:  100339915 NCBI-ProteinID:  XP_002716220 Ensembl:  ENSOCUG00000002486 LinkDB All DBs Position 14:complement(1982929..2157705) Genome browser AA seq 2493 aa AA seqDB search MGVCIQAKGRNFQHQRLAGFLAKPCLLQKDPTLEQSPQATTTPKAGAQLLRAPVSAHLAC PRGARRRAPETSHFSRPQLPLMGAEGGHFMQGRSRQERHSPPRTPHSRSVTSRETRAGRG PPGRGRVGPGRGEVFKYREERRGVALASPRDPGRPEPPAPPRVPSVVPEVWRCAPSGALR SAPAVRPEDPSSARRRRGAGGGVDVSPRFPAVDLSDHNMKMLLIVFLIIMCCRVSVNQTP GPQYGDVVFLVDSSDHLGIKNFPFVKAFLNKMITSLPIDASKFRVALAQYSDQLHSEFEL GTFKGKGPMLNHLKKNVEFLGGSLRVGNALREAHRTYFSAAPNGRDKKEFPPVLVVLASA ESEDDVGAAAEALRRDGVRIISVGVQKAAEEDVKAMATSQFHFSLRTVRDLSTFSHNVTQ AIRDAVQYRDAAVDDILVEVCQGPSVADVVFLLDVAVNGSLEDFDHLKGFLQESVSALDI KESCMRVGLVAYSNETEVIGSLSEGVNRSAVLHRIQSLSPGAGEAYTGAALRKIRKEVFG ARGGSRKNQGVPQIVVLVTHRASEDNVTRAAVNLRRQGVTVFTLGVEGASATQLEKIASH PAEQYVSKLPTFSDLAAHNQTFVKKLRNQITHTVSVLAERTETLKSGCVDTEEADIYLLI DGSGSTQATDFQEMKTFLSEVASMFHIGPHKVRVGAVQYASSWDLEFEIGKYSNKHDLGR AIENIRQLGGDTNTGAALNFTLRLLQKAKQQRGNKVPCHLVVLTNGMSKDSILEPAKRLR EENIRVYAIGVKEANQTQLREIAGDEKRVYYVHDFDALKDIRNQVVQEICAEEACKDLKA DIMFLVDSSGSIGLENFGKMKTFMKSLVSKSQIGAHRVQIGVVQFSHINKEEFQLDTFMS QSDISNAIDRMAHIGETTLTGGALTFVSQYFSPAKGARPNVRKFLILITDGEAQDVVKEP AVALRQEGVIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGICSPREE CKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKAQVRFGALKYADDPEVLF YLGDLDTKMEVISMLQNDQPMGGNTYTAEALAFSDHMFTEARGSRLHKGVPQVLIVITDG ESHDAEKLNGTTKALRDKGILVLAVGIAGANPVELLAMAGSSDKYFFVETFGGLQGIFSD VSASVCNSSKVDCEIEKVDLVFLMDGSNSIDPSDFKKMKEFVASVVQDFDVSLNRVQIGA AQFSHTYQPEFPLGTFTDEKEVSFHIENIQQIFGYTHIGAALHQVGRYFQPDMGSRINTG TPQVLLVLTDGQSQDEVAQAAEELRHNGVDIYSVGIGNVDHQQLIQITGTADKKLTVDNF DELKKIKKRIVRNICTSGSESNCFVDVVVGFDISTHQNGQTMFEGQPWMEAYLQDILRAI SSLNGVSCEVGTETRVSVAFQVTNALGRYSPKFEIYSENILNSLKGVTVKGPSLLDTSLL TSLWDTFQNKSAARGKVVLLFSDGLDDDIEKLEQKSDELRKEGLNALITVALDGAVHSSD LADLLYMEFGKGFEYRTQLTIGMRDLGSQLSKHLVNVAERTCCCLFCKCIGGDGAMGEPG QAGKRGLAGFKGSEGYLGEEGVAGERGAPGPVGEQGTKGCHGAKGPKGNRGLNGQEGEVG ESGIDGLSGEQGDNGLPGRKGEKGDEGIQGIPGRRGTSGDHGAKGLRGDPVSAGPPGSMN SIEKKTPQQSKKGRQGRRGWPGAPGTPGSRRKTATRGRRGQTGPQGITGIPGPAGLEGSQ GLRGPQGRRGEAGVKGEKGDLGSKGPQGPPGPGGEAGNQGRLGSQGNKGEPGDVGEKGAV GFPGPRGLPGDDGSPGYGRVGSKGAKGQEGFPGESGPKGEIGDPGSPGEPGPKGARGNTV SAGLPGEPGSPGEPGPPGRKGVKGARGLAPFSVCELIQYVRDHSPGGHGSPECPVHPTDL VFALDQSRGVTAQAFSRMKEMAAAALRGVRVRTGGCAVGARVAVLTYGGAGTRHVVRFSD ALDESRLLGAIGAIPYEASSSGGELGRAMRFISRNVFKRTLPGAHARRVAAFFSAGAADA ADLQELAAATMELGALDIVPVVIAFGAVPTVRRAFAIDDTGTFQVVVVPLGTDYTPALER LQRCTFCYDTCKPDAACEQARPPAVQSYIDAAFLLDGSRNVGSAEFEDIRAFLGALIDNF EITPEPETSVTGDRVALVTHSPPDFLPNTQKSPVRAEFNLTTYSSKRLMKRHVQESVQQL NGEAFVGHALQWTLDNVFLRTPHVRRNKVIFVISAGETSHLDGEALRKESLRAKCQGYAL FVFSLGPAWNGEELKELASHPLDHHLVQLGRIHKPDHKYAVKFVKSFINSVRRAINRYPP INLKAKCNRPSSTEPKQPLQQFQSFVPGPHKLVLKEDTLLKTRFFQNKKYFSRVTRGGRD AAIQNFTRNTSYNFPTGRRGIKGTPGQHDKGSA NT seq 7482 nt NT seq  +upstreamnt  +downstreamnt atgggggtctgtatccaagcgaaagggagaaatttccagcatcagagactcgcaggcttc cttgctaaaccctgccttctgcaaaaggatccaaccctagagcaaagtccccaggcgacc acaaccccaaaggcaggagcccagctgcttcgtgctcctgtctctgcgcaccttgcctgt ccgcggggtgccagaaggcgcgcaccagaaacgtcccacttctctcgccctcaacttcct ctgatgggcgctgagggtgggcattttatgcaggggagaagccgccaggagagacacagc cccccgagaaccccccactcccgctccgtcacctcccgggagacgcgtgctgggcgcggg ccgccggggcggggaagggtcgggccggggcggggagaggtctttaaataccgcgaggag cggcggggagttgcgctcgctagcccgcgggaccccgggaggccagagccgcccgcgccg ccacgcgtcccgtcggtggtccccgaggtctggcgctgcgctcccagcggtgcgttgcgc tctgcccccgcggtgcgtccggaggaccccagctcggcgcgcaggcggcgcggggctgga ggcggcgtggacgtttccccgagatttccagctgtagatctttcagatcataatatgaaa atgctgctgattgtcttcctcatcatcatgtgttgccgtgtgtctgtgaaccaaactcct ggccctcagtatggcgacgtggtgttcctggtggacagctcggatcacctgggaattaag aacttccctttcgtgaaagccttcctgaacaagatgatcaccagcctccctatcgatgcc agcaagttccgcgtggcgctggcccagtacagcgaccagctccacagcgagttcgagctg ggcaccttcaagggcaagggccccatgctgaaccacctcaagaagaacgtggagttcctg ggcggctccctgcgcgtgggcaacgccctgcgggaggcgcacaggacctacttctccgca gcccccaacggcagagacaagaaggagttccccccggtcctggtggtcctggcttcggcc gagtccgaggacgacgtgggggcggctgcggaggccctgcggcgagacggggtgcgaatc atctccgtgggggtgcagaaggccgctgaggaagacgtcaaggccatggccacgtctcag ttccatttcagcctccggacggtccgggacctgagcacgttctcgcacaacgtgacgcag gccatcagggacgcggtgcagtacagggacgcggccgtggatgacatccttgtagaagtt tgccaaggcccttccgtggctgacgtcgtattcctgttggatgtggcggtcaatggcagc ctggaggactttgaccatcttaaaggattcctgcaggaaagtgtgtctgcccttgacata aaggaaagctgcatgcgggtcggcctggtggcctacagcaatgagacggaggtgatcggc tccctgagcgagggcgtcaatcggtcagcagttctccatcgcatacagagcctctccccc ggagctggagaagcctacacgggagctgccctccggaagatcaggaaggaggtgttcggt gcccgtggcggcagccggaagaatcagggcgtgccccaaattgtggtgctggtgactcac agggcttcagaggacaacgtgaccagggcggctgttaacctccggcgccagggagtgacg gtgttcaccctgggtgtggagggggccagtgccacccagttggaaaagatagcgtctcac cccgccgagcagtacgtctccaagctgccaaccttctctgacctggccgcccacaatcag acatttgtgaagaagctgcggaaccaaataacccacacggtctccgtgctggcagaacgc accgaaaccctcaaatccggctgtgtggacaccgaggaagcagatatctatctgctcatc gatggctcggggagcacccaggccacggacttccaggaaatgaaaaccttcctgtcggag gtggcgagcatgttccacatcggcccccacaaggtgcgggtcggggccgtgcagtacgcc agcagctgggacttggaatttgagattggtaaatactccaacaagcatgatttgggaagg gccattgagaacatcaggcagctgggtggggacacaaacacaggtgcagccctgaacttc acgctgaggctgttgcaaaaagcgaagcagcagcgagggaacaaagtgccatgtcacctt gtcgtcctgacgaacggcatgtccaaggatagcatcctggagcctgcaaaaagactgcga gaagaaaacatccgggtctacgccatcggggtcaaggaggcgaaccaaacacagctgcga gaaattgcaggagacgaaaagagagtgtactacgtgcacgacttcgacgctttaaaagac ataagaaaccaagttgttcaagaaatctgtgctgaagaagcctgcaaagacttgaaagct gacatcatgtttctggtggacagttctggaagtataggactcgaaaactttggaaaaatg aaaacattcatgaagagcttggtgagcaaatctcagattggggcacatcgtgtgcaaatt ggtgtagtccagttcagccacatcaataaggaggagtttcagctggacacattcatgtca cagagtgacatttcaaacgcaatagacaggatggctcacattggcgaaaccaccctgaca ggcggggccctgaccttcgtgtctcagtacttcagccctgccaagggggcccggcccaac gtccggaagtttctcatcctcatcacggatggcgaggctcaggatgtagtgaaggaaccc gcagtggcacttcggcaagaaggcgtgattatctactccgtgggagtgttcggctccaac gtcacccagctagaggagatcagcgggaggccagagatggttttttatgttgagaatttc gacattctgcagcgcatcgaagatgatcttgtgtttggaatctgcagcccccgtgaagag tgcaagcggatcgaagtgttggatgttgtatttgtaattgatagctctggaagcattgac tatgatgaatacaacatcatgaaggattttatgattggcttggtgaagaaagccgacgtc ggcaaggctcaggtccgatttggggctctgaagtacgctgatgacccagaggtgctgttt tatctgggtgaccttgacacaaagatggaggtgatttccatgctgcagaacgaccagccc atggggggcaacacttacactgccgaggcgctagccttctcagaccacatgtttaccgaa gcccggggcagccgcctgcacaagggggtcccccaggtcctcattgtgatcactgatggg gaatcccacgatgctgaaaaactcaatggcaccacaaaggccttgcgagacaaaggcatc ctcgtcttggctgtggggattgctggcgccaatcccgtggagctgttggccatggcggga tcaagcgacaagtacttcttcgtggagacctttggaggcctgcagggcatattttcagat gtgtcagccagtgtctgtaactcttcgaaagtagattgtgaaattgaaaaagtggatctt gtcttcctcatggatggttccaacagcattgacccaagtgacttcaagaagatgaaggag tttgtagcatctgttgttcaagactttgatgtcagcctcaacagggtgcagatcggagca gcccagtttagccacacctatcagccagagtttcccctgggaactttcacagatgaaaag gaagtgtcatttcacattgaaaacatccagcagatctttgggtacacacacattggagct gccctccaccaggtgggacgttacttccagccagacatgggcagcaggatcaacacggga accccccaggtgttgctggtcctcacagatggccagtcccaggatgaggtggcccaagct gccgaggagctgcgccacaacggtgtggacatctactcggtgggcatcggcaatgtggac catcagcagctgatccagatcacggggaccgcggataagaaactcacagttgataacttt gatgagctgaaaaagatcaaaaaaaggattgtgcgcaacatctgcacctcggggagtgag agcaattgtttcgtggatgttgtggtgggatttgatatctcaactcatcagaacgggcag actatgtttgaaggccagccttggatggaagcctaccttcaagacatcttacgtgccatc agctccctcaatggagtaagctgtgaagtgggcacagagactcgggtgagtgtggctttt caagtgacaaatgccctggggagatactctcccaagtttgagatctacagtgaaaacata ctgaacagcttgaagggcgtaacagttaaaggaccttcgcttctcgacacaagcctcctg acttctctgtgggatacgtttcagaataaatcggctgcccgaggaaaggtggtcctttta ttttcagatggattggatgacgacattgagaaacttgaacaaaaatctgatgaactcagg aaagaaggcctgaatgctctcataaccgtggctttggatggagctgtccattcaagtgac ctggctgatcttctctacatggagtttgggaagggatttgagtacagaacacagctcact attggcatgagggatcttgggagccagctgtccaagcacctggtcaacgttgctgaaagg acttgctgctgtctgttctgcaagtgcattggaggagatggcgccatgggagagcctgga caagccgggaaaaggggcctcgcaggtttcaaaggcagtgaaggctacctgggagaagag ggtgttgcaggagaaagaggcgcccctgggccagtgggggagcaagggactaaaggatgt catggcgcgaaaggccccaagggaaacagaggactgaatggacaggagggagaagttggg gaaagtggaattgacggattaagtggagaacagggtgacaatggtcttcctggaagaaaa ggagaaaagggtgatgagggaatccagggaatccccggaaggagagggacttctggtgac cacggagccaagggcctgcggggtgatcctgtgagtgctgggccgcctggttcaatgaat agtatagaaaaaaaaactcctcaacagtcgaaaaaaggacgacagggcaggagaggctgg ccgggcgcccctgggactccaggctccagaagaaagacggcaactcgtggcagaaggggt cagacaggtccacagggaataacgggcatcccgggcccagctggactcgaaggctcccag ggacttaggggcccacagggccgaagaggagaggctggtgtgaaaggagaaaaaggagat ctgggaagcaaaggcccccaggggcctccaggacctggaggagaagcagggaaccaaggc cgtttgggcagccaaggaaataaaggagaacctggagatgtgggagagaaaggagctgtt ggctttcctggtcctcggggcttgccgggtgatgatggcagtccgggctatgggcgtgtg ggaagtaaaggagcaaaggggcaagaaggcttccccggagaaagcggacctaagggggag attggggaccctggtagtccaggagagccggggcccaagggagccaggggcaacacggta tctgctgggcttccaggagagccaggatccccgggggagccgggacctccaggacgcaag ggtgtgaaaggggccagaggcttggcgccattttccgtgtgtgagctcatccagtatgtg cgggaccacagtcctggcggacacgggagccccgagtgccccgtgcaccccacggacttg gtgttcgcgctagaccagtcgcggggcgtcacggcgcaggcgttctcgcgcatgaaggag atggcggcggccgcgctgcgcggcgtgcgcgtgcgcacaggcgggtgcgccgtgggcgcg cgcgtggccgtgctcacgtacgggggcgccggcacgcggcacgtggtgcgcttctcggac gccctggacgagagccggctcctgggcgccattggcgccatcccgtacgaggcgtcgtcg tccggcggcgagctgggccgcgccatgcggttcatctccaggaacgtgttcaagcgcacg ctgccgggcgcccacgcgaggagggtcgccgccttcttcagcgcgggcgcggccgacgct gccgatcttcaggagctcgcggcggccaccatggagctgggagcgctggacatcgtgccc gtggtgatcgcctttggcgcagtgccgaccgtgcggcgggcgttcgcaattgatgacact ggcacattccaagtggtagtggttcccctcgggactgactacacaccagcattagagaga ctgcagcgatgcactttctgctacgacacctgcaagccagatgccgcttgtgagcaggcc agaccgcccgctgtgcagtcttacatcgatgctgctttcctcctggacggctcccggaat gtggggagtgctgaattcgaagatataagagccttcctgggagcactcatcgataacttt gaaatcacccctgagcctgagacctctgtcaccggagaccgggtggctctggtgacccac agcccccccgacttcctacccaacactcagaaaagtcccgttagagccgagttcaacctc accacctacagcagtaagcgccttatgaagaggcacgtgcaagagtcagtgcaacagctc aatggagaggctttcgtcggccatgccttacagtggactctggacaatgtcttcctaagg acaccccacgtgagaagaaacaaagtcatatttgtgatctctgctggagaaaccagtcac ttggacggggaagccttaaggaaagaatccttgcgggccaaatgtcagggctatgcccta tttgtgttctcccttggccctgcttggaacggtgaggaactgaaagaactagccagccac cctttggatcaccacttggtccagcttggccgaattcacaaacctgaccacaaatatgct gtgaagtttgtgaagtcctttataaactcagtcaggcgtgcaatcaacagataccctcca ataaacctcaaagccaagtgcaacagaccaagctctacagaaccaaagcagcccctgcaa cagtttcaaagctttgttcctggaccacataaacttgttctcaaagaagacacattactg aagacaagattctttcaaaataaaaaatatttttcaagagttacaagaggtggcagagac gctgctattcaaaattttaccagaaatacatcctataactttccaactggaagaaggggg ataaaaggcactcccggacaacatgataaaggaagtgcgtga

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