Oryctolagus cuniculus (rabbit): 100340059
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Entry
100340059 CDS
T03373
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ocu03009
]
100340059
Ribosome biogenesis [BR:
ocu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
100340059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
100340059
NCBI-ProteinID:
XP_008255185
Ensembl:
ENSOCUG00000010475
LinkDB
All DBs
Position
4:88140629..88248286
Genome browser
AA seq
2791 aa
AA seq
DB search
MKTKPVSHKTENTYRFLTFAERLGNVNIDIIHRIDRTASYEEEVETYFFEGLLKWRELNL
TEHFGKFYKEVIDKCQSFNQLVYHQNEIVESLKTHLQIKNSFAYQPLLDLVVQLARDLQT
DFYPHFQDFFLTITSILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSNIYSMYSTLLAH
KKLHIRNFAAESFTFLMRKVSDKNALFNLMFFDLGEHPEKTEGVGQLLFEMCKGVRNMFH
SCTGQAVKLILQKLGPVTETETQLSWILVGETLKNMVKSTVLYIYKEHFGTFFDCLQESL
LDLHTKVTQTNCCESSEQIKRLLEIYLILVKHGNGSKITKPADVCKVLCQTLQIAYLSTS
CRKTLLDVISALILGENVSLPETLISETVEKIFESGFERRLILDFSEVMFVMKQFEQLFL
PCFLLYIEKCFLVDDSVVKGEALAILAKLILNKAAPPMAGSMAIEKYPLLFSPQTMGYCL
KQKKTRSKGGKELFPVLNHLLSIIQSPPKKDPTYLSQSWAALVVLPHVRPLEKEKVIPLV
TCCIESLLKTVDRGSFGKGNLFVLCQAVNTLLSLEESSELLHLVPVERVKNLVLMFPSEP
SVLLLADLYYQRLSLCGCKGPLSEENLMELFPKLQANISTGVSKIRLLTIRILNHFDVRL
PEMKEDDGLSERQSAFAILRQAELVPATVNDYREKLLHLRKLRHDVVRTAVPDGPLQEVP
LRYLLGMLYINFSALWDPVIELISSHAHEMENKQFWKVYYEHLEKAATHAEKELQNDLTD
EEKSIGDESWEQTQEGDVGALYHAQLALKTDCRERLDHTNFRFLLWRALAKFPERVEPRS
RELSPLFLRFINNEYYPADLQIAPTQDLRRKGKGVAAEEMEEEPVPVDEEELEEEMLPQD
EPSQKKRTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQTVQKITLDC
IMTYKHPHILPYRENLQRLLEDRSFKEEIVHFSISEDNTVVKTAHRGDLFPILMRILYGR
MKNKTGSKTQGKSASGTRMAIVLRFLAGTQPEEIQIFLDLLFEPVKHFQNGECQSAVIQA
VEGLDLSKVLPLGRQHGVLNSLEIVLKNISHLISAYLPKILQILLCMTATVSHILDQREK
IQLRFINPLKNLRRLGIKMVTDIFLDWESYQFRTEEIDGVFHGAVWPQICRLGSESQYSP
TPLLKLISVWSRNARYFPFLAKQKPGHPECDILTNVFAILSAKNLSDATASIVMDIVNDL
LNLSDFEPTETVLSLPVTGCVYTDIAEDMDKSITMGGRLILPHVPAILQYLSNTTISAEK
VKKKKNRAQVSKELGILSKISKFMKDKEQSSLLITLLLPFLHRGNIAQDTEVDILVTVQN
LLCHCLDPASFLKPLAKLFSVIKNKLSRQLLCTVFQTLADFDSELKYITDVVKLNAFDQR
HLDDINFDVRFATFQTIASYIKDMQTVDVNYLIPVMHNCFYNMELGDMSLSDNASMCLMS
IIKKLSALNVTEKEYREIIHRSLLEKLRKGLKSQTESVQQDYTTVLSCLIQTFPNQLEFK
DLVQLTHHHDPEMDFFENMKHIQIHRRARALKKLAKQLMEGKVVLSSKSLQNYIMPYAMT
PIFDEKMLKHENITIAATEAIGAICNHLSWPAYIYYLKHFIHILQTGQINQKLGVSLLVI
VLDAFHFDHKTLEEQMGKIQNGESVNIDTPELTELPEHEAMELENTDEGEKEITCTSLSD
DEKEPGNLEPADSKGTAPKESECTAKSVSFLPRNKEELERTIKNIQTTITGEILPRLHKC
LASTTKREEEHKLIKSKVVNDEEVVRVPLAFAMVKLMHSLPKEVMEANLPSILLKVCALL
KNRAQEIRDIARSTLAKIIEDLGVHFLQYVLKELQTTLVRGYQVHVLTFTVYMLLQNLTN
KLQVGDLDSCLDIMIEIFNHELFGAVAEEKEVKQILSKVMEARRSKSYDSYEILGKFVGK
DQVTKLILPLKEILQNTTSLKLARKVHETLRRIIAGLIVNQEMTAEAILLLSYGLVSENL
PLLTEKEKNPAPPAPDPRLPPQSCLLLPPTPVRGGPKAVVSKKTNMHIFIESGLRLLHLS
LKTSKIKSSCEHALEMLDPFVALLIDCLGSMDVKVITGALQCLIWVLRFPLPSIETKAEK
LTKHLFLLLKNYAKLGAAKGQNFHLVVNCFKCVTILVKKVKSYHITEKQLQVLLAYAEED
IYDTSRQATAFGLLKAILSRKLLVPEIDDVMRKVSKLAISAQSEPARVQCRQVFLKYILD
YPLGNKLRPNLDFLLAQLNYEHETGRESTLEMIAYLFETFPQGLLHENCGVFFIPLCLMV
VNDDSAVCKKMASMTIKSLLSKISLEKKDWLFEMVTSWFGAKKSLSRQLAALICGVFVES
EGADFERRLKTVLPVIEREINPENFEDIMEETEEKAADRLLFSFLTLMSKLIKGCNIIQF
TRPSETLRKIWSHVHSHLRHPHNWVWLTAAQIFGLLFASCQPEELVRKWHAKKTKKKHSE
PVAIQFLTGDLDQKMKSISLASCHQLHSKFLDQSLGEQVVKNLLFVAKVLYLLEPDSGHK
QGEVREDMEEQDCGATEAEEDKAFAEEKAKGDREEREEPSKPATLMWLIQKLSRVAKLEA
AYSPRNPLKRTCIFKFLGAVAMDLGIDKVKPYLPMIIAPLFRELNSTYSEQDPSLKNLSQ
EIIDLLKKLVGLESFSLAFASVQKQANEKRALRKKRKALEFVTNPDIAAKKKLKKHKNKS
EAKKRKIEFLRPGYKAKRQKSHSLKELAMVE
NT seq
8376 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaaagcctgtttcgcacaagacggagaacacttaccggtttctcacatttgct
gaacgactgggcaatgtgaatatcgacatcattcaccgtatcgatagaactgccagctat
gaagaggaggttgaaacctacttttttgagggtctgctgaaatggagagaattgaacctt
acagaacactttgggaaattttacaaggaagttattgacaaatgccagtcattcaatcag
ctggtataccatcaaaatgagattgttgagagtttgaagactcacctacaaattaagaac
agttttgcctatcaaccccttttggatttggttgtacagttggcacgagatctgcagaca
gatttctatccacactttcaagattttttccttactatcacctcaatcctggagactcag
gacacagagttgttagaatgggcttttacctcgctgtcttatctttacaagtacctatgg
cgactgatggtaaaggacatgtccaatatatacagcatgtacagtacactcctggctcat
aaaaaactgcatataagaaattttgcagctgaaagttttacttttttgatgagaaaggtt
tctgataagaatgcacttttcaacttaatgtttttcgatcttggtgaacatccagaaaag
acagaaggagttggacagttgctttttgagatgtgcaaaggagttagaaatatgtttcat
tcctgtacaggccaggcagtgaagctaattttgcaaaagttaggaccagttacagaaaca
gaaactcaactatcatggattttagttggagaaacactcaaaaacatggtcaaatccact
gtgctctatatctacaaggaacattttggtacattttttgactgcttacaggaatcactc
ctggacctacatacaaaagtaacgcaaactaactgttgtgaaagttctgaacagattaaa
aggttgttagaaatatatctgatacttgtgaaacatggaaatggatcaaagataaccaaa
cctgctgatgtttgtaaggtgttatgtcaaacattacaaatagcctatctctccacatct
tgccggaagaccctcttggatgtaatttctgctttgatccttggagaaaatgtttcctta
ccagagacgctcatcagtgaaaccgtagaaaaaatttttgagagtggatttgaaagacgt
ttaattttggatttttctgaagtcatgtttgttatgaagcagtttgagcagcttttccta
ccatgctttctcttgtatattgagaaatgctttttggttgatgactctgtggtcaaaggt
gaggctctggccattttggccaagctcattctgaacaaagcagcacctcccatggctggc
tcaatggcaatcgaaaagtaccccctgcttttctcaccacagaccatggggtactgttta
aagcagaagaagactagatctaaaggaggaaaggaactgtttccagtattgaaccatctc
ttatcaataattcagtcacccccaaagaaagatcccacttacctttcacagtcttgggca
gcccttgtagtgttacctcatgttagacctcttgagaaagaaaaggtgataccactggtc
acatgctgcatagaatcactgctcaagactgttgacagagggagctttggaaaaggaaac
ttatttgttctttgccaagccgtaaatactctgctaagtttggaagaatcttctgaacta
cttcatttggttcctgtggaacgtgtgaagaatttagtgctaatgtttccttcggagcca
tctgtgttgctgttggctgatctctattatcagagactctccttatgtggctgcaagggg
ccactttcagaagaaaatttaatggaactatttcccaagttgcaagcaaacatttcaaca
ggtgtatccaagattcgacttttgacaataaggatcctaaaccattttgatgttcggctt
ccagaaatgaaggaggatgatgggctctcagagcggcagtccgcctttgctatattacgt
caggctgaacttgtgccagcaactgtgaatgattaccgggagaagcttcttcatctgaga
aaactgagacatgatgtggtgcggactgcagtccctgatggaccattgcaggaggtgcca
cttcgttatttactaggcatgttatatattaacttcagtgcactgtgggatcctgttatt
gaacttataagttctcatgcacatgaaatggaaaataaacaattttggaaagtctactat
gaacatctagaaaaagcagctacacatgctgagaaagaactacagaatgatctaacagat
gaggagaagtccattggagatgaaagttgggagcagacccaggaaggggatgttggagct
ctttatcatgcacagttagcattaaaaacagattgtcgggaaagactggaccataccaac
tttcggtttttgctctggcgagctctagcaaaattcccagagagagtagagccacggtcc
agggaactctctccacttttcttgagatttatcaataatgagtattacccagcagatctg
cagattgctcctacccaggatttgcgaagaaaaggcaaaggggtagccgcagaagaaatg
gaagaggaacctgtcccggtagatgaggaagagttggaggaagagatgttgccccaagat
gagccctcacagaagaaaaggacaagaagggcagcagcaaagcaattaattgctcatttg
caagttttctctaaattttcaaatccacgggcattatatctggaatccaaattgtatgag
ttatatcttcagttattgctacaccaagatcaaacagtacaaaaaataaccctggattgc
ataatgacatataaacatcctcatatcctcccttacagggaaaacttacaaaggttgctt
gaagatagaagctttaaggaagagatagtgcatttcagcatttcagaagataatactgta
gtgaaaacagcccaccgaggagatctgtttcctattctcatgagaattctgtatgggcga
atgaagaacaagactgggagtaaaactcaggggaaatctgcttcaggcacccgcatggcc
attgtcctgcgcttcctcgctgggacccaacctgaggagatccagatattcttagacctg
ctgtttgagcctgtgaagcacttccagaatggcgagtgccagtctgcagtcattcaagcc
gtagaaggtttggatttatctaaagttcttcctttgggccgtcagcatggtgtcttaaat
agccttgaaatagtgttgaagaacattagccatctgatcagcgcgtacttacccaagatt
ttgcagatactgctctgtatgacagcgaccgtatcacacatccttgaccaacgggaaaag
atacagctgaggtttattaacccactgaaaaaccttagacgtcttggaatcaaaatggta
actgatatctttttggattgggaatcctatcagttcagaacagaagaaattgatggtgta
tttcatggtgctgtctggccccagatctgcaggcttggatcagagagtcagtattctcct
acacctctactgaaactaattagtgtctggagcagaaatgcaagatattttccttttctg
gccaaacagaagcctggacatccagaatgtgatattctgaccaatgtttttgcaattctg
tcagcaaagaatctctctgatgccacagccagtattgtgatggatatagtcaatgacctt
cttaacctttcagattttgagcccacagaaacagttttgagcttgccagtaactggatgc
gtatatactgacatagcagaagacatggacaagtctatcactatgggaggaagattaatt
ttgcctcatgtacctgcaattcttcagtatctcagcaacaccacaatcagtgcagaaaag
gtgaaaaagaaaaagaatagagcacaagtcagcaaggaacttggcattctttcaaagatc
agcaaatttatgaaagacaaagaacaaagttctctgctcattacacttctccttcctttc
ctacatcgtggcaatattgctcaggatacagaggtggatattctggtgacagtgcagaac
ttgctgtgtcattgtctggaccctgcaagcttcctcaagccactagcgaaactcttctca
gttattaagaacaagctgtcgagacagctgctttgtacagttttccagactcttgctgat
tttgatagtgaactaaagtatatcactgatgttgtcaagcttaacgcctttgatcaaaga
catcttgatgacatcaactttgatgtccgatttgcaacattccagaccattgcctcatac
attaaagacatgcagactgtggatgttaactacctaattccagttatgcataattgtttc
tataatatggagttaggagatatgtctttaagtgataatgccagcatgtgtttgatgagt
atcatcaaaaaactatcagctttaaatgtcacagagaaagaatacagagaaatcattcat
cgttcactactggagaaattgaggaaagggttgaagagccagacagagagtgtccaacag
gattataccacagtactttcttgtttaattcaaacctttccaaatcaactagaatttaaa
gacttggtacagcttactcatcaccatgatccagaaatggacttctttgagaacatgaag
cacatccagatccacagaagagccagagccctgaagaaactggcgaaacagctgatggaa
ggcaaagttgtgctgtcctccaaatctcttcagaattacatcatgccttatgccatgact
ccaatttttgatgagaaaatgctcaagcatgaaaacataaccattgctgccacagaggcc
attggagccatctgcaatcatctctcttggccagcatatatctattacttgaaacatttt
attcatatcttacagactggacagatcaaccaaaaattgggtgtcagtttgctagtaata
gtgttagatgcatttcactttgaccacaaaactcttgaagaacaaatggggaaaattcag
aatggagaaagtgtaaacatagacacaccagaattgactgaattaccagagcatgaggcc
atggagctagaaaacacggatgaaggagagaaggaaattacatgcacgagtttgtcagat
gacgaaaaagagccagggaaccttgaaccagcagattcaaaagggacagcacctaaggaa
tcagagtgcaccgctaagtctgtctctttcctccctcgaaataaggaagaattggagaga
acgattaaaaatatccaaacaaccataactggggagatcctacccaggctacataaatgc
ctcgcttccacgactaaaagggaagaagaacataagctcatcaagtcgaaggtggtgaat
gacgaggaagtggttcgagttcctttagcttttgccatggttaagctaatgcactccctt
ccaaaagaagttatggaagccaacctgccaagtattttgctgaaagtgtgtgccctcctc
aagaacagagcacaagaaatcagagacattgcacgcagcactctggcaaaaataatagag
gatctgggggtgcatttcctacagtatgtcttaaaggaattacagaccacccttgttcgt
gggtatcaggtccacgtgctaactttcactgtttacatgttgctacaaaacctcaccaac
aagctccaagttggggatttagattcttgtttggatataatgattgagatttttaaccat
gagttgtttggtgccgttgctgaagagaaggaagtaaagcagatcctctctaaagtcatg
gaggcacggagaagcaagagttacgattcctatgaaatcctgggaaagttcgtaggaaaa
gatcaagttacaaagctcattcttccattaaaagagatcttacaaaataccacgagctta
aaactggcccgcaaggtgcatgaaaccttacgccgaatcatagcaggattgattgtaaat
caggaaatgacggcagaagctattctgttgctcagttacggtttggtcagtgaaaatctt
cccctgttaacagagaaagaaaaaaacccagcaccccctgcaccagatccacgcctgcca
ccccagagctgccttctgcttccaccgactccggttcgaggtggaccaaaagctgttgtg
agcaagaaaaccaacatgcacatatttattgagtctgggcttcggctgttacatctgagt
ctaaagacttccaagatcaagtcttcatgtgaacatgccctggaaatgttggatcctttt
gtggctctccttatcgactgcctgggttccatggacgtgaaggtgatcacaggtgcttta
caatgcctaatctgggtcttgaggttccctctgccttccatagaaaccaaagcagaaaag
ttgacgaaacacctcttccttttgctcaagaactatgcaaaacttggggctgccaagggt
cagaatttccacctggtggtcaactgcttcaagtgtgtgaccatccttgtaaagaaagtc
aagtcgtaccatataactgaaaaacagcttcaagttctactggcgtacgctgaggaggat
atttatgacacttcaagacaagctactgcatttggtcttctcaaggctattttatcaaga
aagttgttggtcccagaaattgatgatgtcatgcggaaagtatccaagttggctatttct
gcacaaagcgaacctgccagagtccagtgcagacaggtttttctgaaatacattcttgac
tatcctctgggaaacaaattgagacccaacttggacttcttgcttgctcaactgaattat
gaacacgagaccggccgagagtccaccttggagatgatcgcctatctctttgagacattc
cctcagggacttcttcacgagaactgtggagtgttctttattcctctttgtctaatggtg
gtgaatgatgactctgccgtgtgcaaaaagatggcatccatgaccatcaaatccttactc
agtaaaatcagccttgagaaaaaagattggctatttgaaatggtcacctcctggtttgga
gcaaaaaagagtctgagtagacagcttgctgccttaatctgtggagtgtttgtggaaagt
gaaggtgctgattttgagagaaggcttaaaactgtccttcctgtgattgaaagggaaatt
aatcctgagaactttgaagatatcatggaagagactgaagagaaagctgcagatcgcctg
ctgttcagttttcttacactgatgagcaagctcatcaagggatgtaacattattcagttt
accaggccctcagagactttgcgtaaaatctggagtcatgttcattctcacttgagacat
ccacacaattgggtgtggctcactgcagcccagatttttggattgctctttgcctcttgt
cagccagaggagcttgttcgaaaatggcatgccaaaaagacaaaaaagaaacactcagaa
cctgtagcaatccagttcctaacgggtgaccttgaccagaagatgaaaagtatctctcta
gcctcttgccatcagttgcattccaagttcttagatcagtctctaggagaacaggttgtt
aagaatttgttgttcgtagccaaagtcttgtacttactggaacctgattctggacataag
caaggtgaggtaagagaagacatggaagaacaagactgtggggccacagaggcagaagag
gacaaagcatttgcagaggagaaggccaagggtgacagagaagagagggaagagcccagc
aagccagccacgctgatgtggctcatccagaagttgtcccgggttgcaaaactggaagct
gcttattcacctagaaaccccttaaagagaacatgcatctttaagttccttggcgctgta
gcaatggatcttgggatagacaaagtgaagccatatctcccaatgatcatcgctcctttg
tttcgagaactgaacagcacctattcagagcaagatccttcgctgaagaatctgtcccag
gaaatcatagacttactcaaaaaactcgttgggctcgagagcttttcattagcctttgcc
tctgtacaaaaacaggctaatgagaaaagagcactccggaaaaagaggaaggctctggag
tttgtaaccaatcctgatattgctgccaagaaaaagctgaagaaacacaagaataaaagt
gaagcaaagaagagaaagatagagttcctgcgtccaggctataaggccaagagacagaaa
agccacagcctgaaagagttagcaatggtggaatag
DBGET
integrated database retrieval system
