KEGG   Oryctolagus cuniculus (rabbit): 100340140
Entry
100340140         CDS       T03373                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03250  Viral life cycle - HIV-1
ocu03272  Virion - Hepatitis viruses
ocu04144  Endocytosis
ocu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100340140
   03272 Virion - Hepatitis viruses
    100340140
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100340140
  09143 Cell growth and death
   04217 Necroptosis
    100340140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocu04131]
    100340140
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100340140
Membrane trafficking [BR:ocu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    100340140
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100340140
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_16 AAA_22 AAA_14 AAA_25 AAA_5 RuvB_N IstB_IS21 DUF815 AAA_17 AAA_2 AAA_18 AAA_33 NPHP3_N RNA_helicase nSTAND3 AAA_24 PhoH ResIII AAA_28 Mg_chelatase NACHT AAA_7 Parvo_NS1 bpMoxR AAA_30 YhdB ABC_tran
Other DBs
NCBI-GeneID: 100340140
NCBI-ProteinID: XP_002711764
LinkDB
Position
5:24718822..24729639
AA seq 437 aa
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
VQYLDRAEKLKDYLRNKEKHSKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHSLTDADIHELARKTEGYSGADISVIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPGVMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNA
DDLLKVKKFSEDFGQES
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgacaacgtcaaccctccagaaagccattgatctggtgacgaaagccacagaggaggac
aaagccaagaattacgaggaggccctacggctgtaccagcatgcggtggagtacttcctc
cacgccatcaagtatgaggcgcacagcgacaaggccaaggagagcattcgagccaagtgc
gtgcagtacctagaccgagcggagaagctgaaggattacttacggaacaaggagaagcac
agcaagaagccagtgaaagagaatcagagtgaaggcaagggcagcgatagtgacagcgaa
ggggataacccagagaaaaagaagttgcaggagcagctgatgggtgctgttgtcatggag
aagcccaacatacggtggaatgacgtggcggggctggagggggccaaggaggccctcaaa
gaagctgtcattttaccaattaaattcccacatttgttcacaggcaagcgcaccccctgg
cgagggatactgctctttggaccccctggcacggggaaatcctacctggccaaagctgtg
gccacggaggccaacaactccaccttcttctctgtgtcctcctcagatctgatgtctaag
tggttgggggagagcgagaagctagtgaagaacctgttcgagctggccaggcagcacaag
ccttccatcatcttcatcgatgaggtggattccctctgcggctcccgaaatgagaatgag
agcgaggctgcccgaaggatcaaaacagaattcttggtccagatgcagggggtggggaat
aacaatgatgggactctggttcttggcgccacaaatatcccctgggtattggattcggcc
attagaaggaggtttgaaaaacgaatctacattccgttaccagaggaagctgcccgtgcg
cagatgttccggttacatctggggagcactccccacagcctcacggacgccgacatccac
gagctggcccgcaagacggagggctattctggggcagacatcagcgtcatcgtgcgggac
tccctcatgcagcccgtcaggaaagtgcagtcggcgacacacttcaagaaggtctgtggc
ccttctcgcaccaaccctggcgtcatgatcgacgacctcctgacaccatgctcaccggga
gatcccggggccatggagatgacgtggatggatgtccctggtgacaaactcttagagcct
gtggtttgcatgtcggacatgctccgctctttggccaccactcggcccacggtgaacgca
gatgacctcctgaaagtgaagaaattctcagaggacttcggccaggagagctaa

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