Oryctolagus cuniculus (rabbit): 100340509
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Entry
100340509 CDS
T03373
Name
(RefSeq) nephrocystin-3 isoform X1
KO
K19360
nephrocystin-3
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ocu03037
]
100340509
Cilium and associated proteins [BR:
ocu03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
100340509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
NPHP3_hel
NPHP3
TPR_10
TPR_1
TPR_7
TPR_8
TPR_2
TPR_MalT
TPR_16
TPR_19
TPR_17
TPR_14
NPHP3_N
TPR_11
TPR_3
TPR_6
AAA_16
HAT_Syf1_CNRKL1_C
ANAPC3
KAP_NTPase
AAA_22
NACHT
DUF2225
AAA_19
AAA_14
14-3-3
Viral_helicase1
ARM_TT21_4th
TPR-S
T2SSE
FliD_C
Motif
Other DBs
NCBI-GeneID:
100340509
NCBI-ProteinID:
XP_008264424
Ensembl:
ENSOCUG00000014309
LinkDB
All DBs
Position
14:complement(28723456..28769248)
Genome browser
AA seq
1325 aa
AA seq
DB search
MGTASSLVRPAGGEVIEDTYGAGGGEACEIPVEVKPKARLLRGSLRRGAGAGPGAQARGA
GGGGLLGASFRSTGSSLPELEYAAAECERLRKEYEIFRVSKTQELLSMGRREAKLDTENK
RLRAELQALQKTYQKILREKESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKENEIQ
DLLRAKRELESKLQRLQAQGIQVFDPGESDSDDNCTDVTAAGTQCEYWTGGALGSEPSLG
SMIQLQQSFRGPEFAHSSIDVEGPFANVNRDDWDMAVASLLQVTPLFSHSLWSNTVRCYL
ICTEETQVEMDLFLKVYSPKLKRMCETMGYFFHAVYFPVDVENQFLTVRKWEIEKSSLVI
LFIHVTLPSLLLEDCEEAFLKNPEGKPRLIYHHLEEGEVSSDSVQQLLDQVSNLKTSKAK
IIDHVGDPADGVYKTYICVEKIIKQDILGLENTDLECKDLGNEESIPEKDDFGDVLWDIH
DEQEQMEAFQQASNSAHELGFEKYYQRLNDLVAAPAPIPPLLVSGGPGSGKSLLLSKWIQ
LQQKNSPTTLILSHFVGRPMSTSAESSLIIKRLTLKLMQHSWSVSAITLDPAKLLEEFPR
WLEKLSARHQGSIIIIIDSIDQVQQVEKHMKWLIDPLPVNVRVIVSVNVETCPPAWRLWP
TLHLDPLNPKDAKSIIIAECHSVDIKLNKEQEKQLERHCRSATTCNALYVTLFGKMVARA
GKAGNLDKTLHQCFQCQDTASLYRLVLHSIWESMANDGDKELMKQILCLINVSHNGVSES
ELMELYPELSWAVLTSLIHSLYKMCLLTYGCGLLRFQNLQAWETVRLEYLEGPTLTSSYR
QKLINYFTLQLSQDRVTWRSADELLWLLQQQGNKQQLHDGLLNLLVSQNLYKRGHFAELL
SYWQFVGKDKSAMAAEYFESLKRYEKNCDGEENMICLADLYETLGRFLKDLGLLSQAVVP
LQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAYGADHPR
TARELEALATLYQKQNKYEQAEHFRKKSFKIRQKATRRKGNLYGFALLRRRALQLEELTL
GKDTPDNARTLNELGVLYYLQNNLETADQFLKRSLEMRERILGPDHPDCAQSLNNLAALC
NEKKQYEKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVE
IRQKSFGPKHPSVATALVNLAVLYSQMKRHKEALPLYERALKIYEDSLGRMHPRVGETLK
NLAVLSYEEGDFEKAAELYKRAMEIKEAETSLLGGKAPSRHSSSGDTFSLKTAHSPHGFI
HQGQK
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgcgtcgtctcttgtgcggcccgcgggcggggaggtgattgaggacacgtac
ggcgcgggcggcggtgaggcgtgcgagatcccggtggaggtgaagcccaaggcccgcctg
ctgcgcggctcgctccgccggggcgctggggccgggcccggggcgcaggcgcgcggcgcg
ggcggcggcgggctgttgggggccagcttcaggtccaccggctcgtcgctgcccgaactg
gagtacgcggcggccgagtgcgagcggctcaggaaggagtacgagatcttccgggtcagc
aagacccaggagctgttgtccatgggccgccgcgaggccaagctggacacggagaacaag
cggctgcgggccgagctgcaggcacttcagaaaacttaccagaagatacttcgggaaaaa
gaaagtgctttggaagcaaaataccaagcaatggagagagcagctacatttgaacatgac
agagataaagttaaaaggcaattcaagatttttagggaaaccaaagaaaacgaaattcaa
gacttactaagagccaagcgagagctggagagcaaacttcagaggttgcaggctcagggg
atccaggtgtttgatcctggggagtctgattcggatgacaactgtacagatgttactgct
gctgggacccagtgtgagtactggactggcggagccttggggagtgagccctccctagga
agtatgatccagcttcagcagtctttccgaggccctgagtttgcccatagttctatagat
gtggaaggaccctttgcaaatgtcaacagagatgactgggatatggctgtagctagtttg
ttgcaggttactcccttgttttcacactctctatggagtaacactgtcagatgttacctc
atttgtacagaggagacccaagtggagatggatcttttccttaaggtctattcacctaaa
cttaaaagaatgtgtgagacaatgggatattttttccatgctgtttatttcccagtagat
gttgaaaatcaattcctcactgtaagaaaatgggaaattgagaagagttcattagttatt
ttattcattcacgtaacgttaccaagccttttattggaagactgtgaagaagcttttctg
aaaaaccctgaaggaaaaccacgattaatttatcatcatttggaagagggggaagtcagt
tctgactctgtgcaacaattgcttgatcaagtttccaacctaaagaccagcaaagccaag
atcattgatcatgtgggggatcctgcagatggagtatataaaacttatatttgtgtggaa
aagattattaaacaggacatcttaggccttgagaacacagacctggagtgtaaggatttg
ggcaatgaagagtccattccagaaaaagacgactttggtgatgttctgtgggacatacat
gatgagcaagaacaaatggaagccttccagcaagcttctaattctgcccacgagttggga
tttgagaaatattaccaacgccttaatgatttagtggcagcaccagccccaatcccaccc
cttctggtgtctggaggccctggttctggaaagtcccttcttttatcaaagtggattcag
ttacaacagaagaattcccctaccacactgatcctgtctcattttgtggggaggcccatg
tccaccagcgcagaatcttccttgattattaaacgactcactctgaagttgatgcagcac
tcttggtcagtatctgcgattacgctggatcctgctaagcttctggaagaattcccacgt
tggttagaaaaactctctgctcgtcatcaaggcagcatcatcatcatcattgattctata
gatcaagttcagcaagttgaaaaacacatgaaatggctgatagatcctctgccagtgaat
gtgagagtaattgtttctgtgaatgtagaaacctgccctccagcatggaggttgtggcca
acacttcatcttgatcctttaaatccaaaagatgcaaaatctattataattgcagaatgc
cactctgtagacattaaattgaataaagagcaggagaagcagctggaacgacactgtcgt
tcggctacaacctgcaatgccctttatgtcacgctcttcggcaaaatggtcgcacgtgct
gggaaggcagggaatttagataaaacccttcaccagtgtttccagtgtcaagatactgct
tcgttgtacaggcttgttctgcactccatctgggagtccatggcaaatgatggggataag
gaactaatgaaacagattctctgcctcatcaatgttagtcacaatggtgtgagtgaatca
gagctgatggaactctaccctgaattatcctgggctgtcttgacctctcttattcacagt
ttatacaaaatgtgtttgttaacttatggttgtggcttgctcaggtttcagaatctacag
gcctgggaaacagtgaggctggagtacctggaagggcccacgcttacttcttcatatagg
cagaagctgatcaactacttcaccttgcagctcagtcaggacagggtcacctggagaagt
gcggatgagctcttgtggcttcttcagcagcaggggaataagcagcagttacacgatggc
ctgctcaacctcctcgtgtctcagaatctttataagagaggacactttgctgagttgctg
agttattggcagtttgttggcaaagacaaaagcgcgatggcagcagaatactttgagtca
ttgaagcggtatgagaaaaactgtgatggcgaggagaacatgatttgcttagctgatctt
tatgaaaccctggggcggtttctcaaggacctaggcctcctcagccaggctgtagtacct
ctgcagaggtctctagaaattcgcgaaacagctttagatccagatcacccgagagtagct
cagtcccttcaccaactagcaagtgtgtatgtgcagtggaagaagtttggcaatgcagag
cagctgtacaaacaggccctggaaatctcggaaaacgcctatggtgcagaccatccacgc
actgcccgggaacttgaggcacttgcgactttgtaccagaaacagaataaatatgaacaa
gctgaacattttaggaaaaaatcctttaaaattcgtcagaaagctacaaggagaaaaggc
aacctgtatggattcgcccttttgcgtaggcgggccctgcagctggaagagttgactctg
ggtaaggacacgcctgataatgcgcggaccctcaatgaactgggtgtgctgtactatcta
cagaacaacctggagacagctgaccagtttctgaagcggtccttggaaatgcgggagcgc
attctagggccggatcaccctgactgcgcccagtccctcaataacttggcggctctgtgc
aatgaaaagaaacagtatgagaaggcggaggagctttacgagagggcgctggacatccgg
aggcgagcgctggctcctgaccacccttctctggcctacaccgtgaagcatcttgcaatc
ttgtataaaaaaatgggaaaactggacaaagcagtacctttgtatgaattggctgttgaa
attcgacagaaatcttttggtccaaagcaccctagtgtagccactgccttggtgaactta
gcagttctttacagccaaatgaaaagacacaaggaagccttgccattatacgaaagagca
ttaaagatctatgaagatagcttgggtcggatgcatcctcgagttggagaaacattaaaa
aatttagctgtgcttagctatgaagaaggggattttgaaaaagctgctgagctatacaaa
cgggctatggaaataaaagaagcagaaacatcactcttgggtggaaaagctccttcgcga
cattcgtcgagtggagacaccttcagcttaaaaacggctcactcgcctcacggtttcatc
catcaaggccagaagtaa
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