Oryctolagus cuniculus (rabbit): 100340616 Help Entry 100340616         CDS       T03373                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism ocu  Oryctolagus cuniculus (rabbit) Pathway ocu03040   Spliceosome Brite KEGG Orthology (KO) [BR:ocu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100340616  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ocu03019]     100340616    03041 Spliceosome [BR:ocu03041]     100340616 Messenger RNA biogenesis [BR:ocu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      100340616 Spliceosome [BR:ocu03041]  Complex B   Other components    Prp19-related factors     100340616  Complex C     100340616 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 TPR_12 TPR_2 TPR_8 Suf TPR_19 TPR_15 ARM_TT21 TPR_MalT ARM_TT21_C TPR_1 TPR_NPHP3 TPR_21 Motif Other DBs NCBI-GeneID:  100340616 NCBI-ProteinID:  XP_051691490 Ensembl:  ENSOCUG00000000874 LinkDB All DBs Position Unknown AA seq 855 aa AA seqDB search MVVMARISRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA LKLLPCSYKLWYRYLKAQRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA AEAERDQPPRAQSKILFVRSNASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE QQSVPAAVFGSLKED NT seq 2568 nt NT seq  +upstreamnt  +downstreamnt atggtggtgatggcgcgcatctcacggcccgagcggccggatcttgtctttgaggaagag gacctcccctacgaggaggagatcatgcggaaccagttctccgtcaaatgctggctgcgc tacatcgagttcaaacagggcgccccgaagcccaggctgaaccagctgtacgagcgggcg ctcaagctgctgccctgcagctacaagctctggtaccgctacctgaaggcgcagcgggcg caggtgaagcatcgctgtgtgaccgaccccgcctacgaagacgtcaacaactgccacgag cgggcctttgtgttcatgcacaagatgccccgtctgtggctggattactgccagttcctg atggaccagggccgcgtcacacacacccgccgcaccttcgaccgcgccctccgggccctg cccatcacacagcactctcggatctggcccttgtacctgcgcttcctgcgctcacacccc ctgccggagaccgctgtgcgaggctaccggcgcttcctcaagctgagtcctgagagcgca gaagaatacattgagtacctcaagtcgagcgaccggctggatgaggccgcccagcgcctg gccaccgtggtgaatgatgagcggttcgtgtccaaggcgggcaagtccaactaccagctg tggcacgagctgtgtgacctcatctcccagaacccagacaaggtgcagtccctcaacgtg gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc tcgctggccgactactacatccgcagcggccacttcgagaaggctcgggacgtgtacgag gaagccatccggaccgtgatgaccgtgcgcgacttcacgcaggtgttcgacagctacgcc cagttcgaggagagcatgatcgctgctaagatggagacggcctctgagctggggcgcgag gaggaggatgacgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg cggcccctgttgctgaatagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg cacaaacgcgtggccctgcaccagggccgcccccgggagatcatcaacacgtacacggag gccgtgcagacggtggaccccttcaaggccacaggcaagccccacaccctgtgggtcgca tttgccaagttttatgaggacaacgggcagctggatgatgcccgcgtcatcctggagaag gccaccaaggtgaacttcaagcaggtggacgacctggcgagcgtgtggtgccagtgcggg gagctggagctgcggcacgagaactacgacgaggcgctgcggctgctgcggaaggcgacg gcgctgcccgcccgccgggccgagtacttcgacggctccgagccggtgcagaaccgcgtg tacaagtccctgaaggtgtggtcgatgcttgccgacctggaggagagcctcggcaccttc cagtccaccaaggcggtgtatgaccgcatcctggacctgcgcatcgccacgccgcagatc gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcg tacgagcgcggcatctcgctgttcaagtggcccaacgtgtcagacatctggagcacctac ctgaccaagttcatcgcccgctacggcggccgcaagctggagcgggcgcgggacctcttc gagcaggcgctggacggctgccctcccaaatacgccaaaaccctgtacctgctgtacgcg cagctggaggaggagtggggcctggcccggcatgccatggccgtgtacgagcgcgccacc cgcgcggtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgggcggcc gagatctacggcgtcacccacacccgcagcatctaccagaaggccatcgaggtgctgtcg gacgagcacgcgcgggagatgtgcctgcggttcgcggacatggagtgcaagctgggggag attgaccgtgcacgcgccatctacagcttctgctcccagatctgcgacccgcggacgacc ggcgccttctggcagacctggaaggatttcgaggtgcggcacggcaatgaggacaccatc cgggagatgctgcgcatccgccgcagcgtgcaggccacgtacaacacgcaggtcaacttc atggcctcccagatgctcaaggtgtcgggcagcgccacgggcaccgtgtccgacctggct ccggggcagagcggcatggacgacatgaagctgctggagcagcgggcagagcagctggcg gccgaggcggagcgggaccagcccccgcgggcacagagcaagatcctttttgtgaggagc aatgcctctcgcgaggagctggccgagctggcccagcaagccaacccagaggagatccag ctgggcgaggacgaagacgaggacgagatggacctggagcccaacgaggtgcggctggag cagcagagtgtgccggctgcagtgtttgggagcctgaaagaggactga

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