Oryctolagus cuniculus (rabbit): 100340689
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Entry
100340689 CDS
T03373
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100340689
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocu00536
]
100340689
Glycosaminoglycan binding proteins [BR:
ocu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100340689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100340689
NCBI-ProteinID:
XP_051679796
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Position
18:complement(13904501..13989609)
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AA seq
582 aa
AA seq
DB search
MPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQPGPKGE
MGPTGPRGQQGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQG
PPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHG
AKGAPGIAVAGMKGEPGSPGAKGEKGAAGPPGLLGQKGEKGDAGNAIGGGRGDPGPPGLP
GPPGPKGEAGVIGQTGPPGQQGEKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGL
PGQIGPPGAPGTPGQKGEIGLPGPPGLDGEKGPRGKSGDMGPPGPQGPPGKDGPPGTKGD
NGPPGNPGEKGEKGETGPAGSPGLDGPTGEKGEPGDQGRPGATGPPGPIGLPGFTGEKGQ
AGEKGDPGAEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLP
GASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGVTGPTGAAGLPGLHGPPGDKGSR
GERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgcctggacgtgtgggggtcaagggccaaccaggcgagaagggtgcccctggggacgcc
ggtatgtccatcatcggcccccgaggccccccgggccagccgggcacgcgaggctttcct
gggtttccgggtcccatcgggcttgatggcaaaccgggccagcccgggccgaaaggggag
atgggcccgacaggtccccgaggacagcagggacctcaaggacaaaaaggagaaaagggt
caatgtggagagtacccacatcggctgctgcctctgctcaattcagtgcgactggctcca
cccccagtcataaaaaggcggaccttccagggtgagcagggccaggccggcatccagggc
ccaccagggccaccgggcccccccggaccaagtggacctctggggcatccaggactgcca
gggcccatggggccacctggcttacccgggcctccgggaccgaagggagacccagggatc
cagggctaccatggccggaagggagaacggggcatgccagggatgccgggcaagcacgga
gccaagggagctccgggcatcgccgtggctgggatgaagggtgagccggggagcccagga
gccaagggtgagaagggggctgcaggtccccccgggctcctgggacagaaaggagagaaa
ggcgatgctggcaacgccattggaggaggcaggggggatcctggccccccagggctccct
ggccctccggggccaaagggagaagcaggtgtcattggccaaaccggccccccaggacag
caaggagaaaagggctccaagggtgagccggggaaaggagagctggtggattacaatggc
aacatcagcgaggccctccaggagatccgcacattggccttgatgggccctcctggtctt
cccgggcagatcggcccacccggagctccaggaaccccaggccagaagggggagatcgga
ctgccgggccctccgggacttgatggagagaagggacctcgtggcaaatcaggagacatg
ggcccccctggtccccagggacccccgggaaaggatggacctccgggaacaaagggagac
aacgggcccccagggaacccaggagagaagggggagaaaggggagacgggcccggcaggc
tcaccgggtctagacggccccaccggggagaaaggagaaccaggtgaccaggggaggcct
ggagcaacaggaccgcccggccccatcgggctcccgggatttacaggagagaaaggacaa
gccggggagaagggtgacccgggagcagaggttcctgggccaccagggccagaggggccc
ccgggacctccggggcttcaaggtgttcctggaccaaagggagaagcaggactggacgga
gcaaaaggagagaagggcgtccagggagagaaaggagaccgggggcctctgggactgcct
ggagcgtcaggtttggacggcaggcctgggccaccgggcactccaggaccaattggagtt
ccaggcccggcgggaccaaagggcgagaggggcagcaaaggagaccctggggtgacagga
ccaacaggagcagcaggacttcctggcttacacggaccacccggggacaaaggaagccgg
ggggagagggggaagaaaggctctagagggcctaaaggggataagggagaccaaggagcg
cctggactagatgccccctgtccattgggtgaagacggcctacctgtccagggctgctgg
aacaagtga
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