Oryctolagus cuniculus (rabbit): 100340865
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Entry
100340865 CDS
T03373
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100340865
09123 Folding, sorting and degradation
03018 RNA degradation
100340865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100340865
03041 Spliceosome [BR:
ocu03041
]
100340865
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100340865
mRNA cycle factors
Stress granule specific factors
100340865
Spliceosome [BR:
ocu03041
]
Complex C
Other components
Complex C specific factors
100340865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
100340865
NCBI-ProteinID:
XP_051687680
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPAV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctgcacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgttccttgggctacgcgtatgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgtgatcaagggaaag
ccagtacgcatcatgtggtctcagcgtgatccatcccttcacaaaagtggagtaggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacattttct
gcttttggtaacatcctttcttgtaaggtggtttgtgatgaaaatggttccaagggctat
ggatttgtgcattttgagacgcaggaggctgctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgcaaagtgtttgttggacgatttaagtctcgtaaagaacgagaa
gcagagctcggagctagggcaaaagagttcaccaatgtttacatcaagaattttggggaa
gacatggatgacgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgatgaaagtggaaaatccaaaggatttggatttgtaagctttgagagg
cacgaagatgcacagaaagctgtggatgagatgaatggaaaggagctcaatggaaaacaa
atttacgttggtcgagctcagaaaaaagtggaacgccagacggaacttaagcgcaaattt
gagcagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
ctggacgatggtattgatgatgagcggctccgaaaagagttttctccatttggtacaatc
actagtgctaaggttatgatggagggtggtcgaagcaaagggtttggttttgtatgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaacggtagaattgtggccacc
aagcccttgtatgtagctttagctcagcgcaaggaggagcgccaggctcacctcactaac
cagtacatgcagagaatggcgagtgtgcgagctgtgcccaaccccgtgatcaacccttac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactcagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagcactatgagaccagcttcttcacaggttccacgggtcatgtccacacag
cgtgttgctaacacatcgacacagacaatgggcccacgtcctgcagctgctgctgctgca
gccactcctgctgtgcgcacggttccccagtacaagtacgcggcaggcgttcgcaatcct
cagcagcatctaaatgcacagccgcaggtgaccatgcagcagcctgctgttcatgtacaa
ggtcaggagcctttgactgcttccatgttggcatctgccccccctcaagagcaaaagcaa
atgttgggtgaacggctgtttcctcttattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagatcgataattcagaacttcttcatatgcttgagtctcca
gagtctctccgttctaaagtggatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgcccagaaagcagtgaacagtgccaccggcgttcccgctgtttag
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