Oryctolagus cuniculus (rabbit): 100341337
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Entry
100341337 CDS
T03373
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
100341337
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocu04040
]
100341337
Ion channels [BR:
ocu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100341337
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
ANK_LRRK2
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100341337
NCBI-ProteinID:
XP_008253877
Ensembl:
ENSOCUG00000021250
LinkDB
All DBs
Position
3:complement(87770956..87840613)
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AA seq
1124 aa
AA seq
DB search
MKRSLRKMLRAGEKSPHGVDYQDVENNKDDSKNIEVDFEDNEWGFQQSTKNRKKVSEDDE
NVSPLHHAAAEGQVELMKMIISDSSCEVLNVMDDYGNTPLHWATEKNQVESVKFLLSKGA
NPNLRNSSMMAPLHIAVQSMHNEVVKVLTEHNGTDINLEGENGNTALITACSKDNSEALQ
MLLQKGAKLCKSNKWRCFPVHLAAFSGAKKCMELILEFGEKRGYRRESQINFVNTGKASP
LHFAVQSGDLEMIKLCLDNGARIDLKENGKCMPLHFAATQGATEIVKLMISSYSGSSDIV
NAVDGNHETLLHRASLFDHHELAEYLISVGADINITDAEGRSPLMLATASASWSTVNLLL
SKGAHVDIKDHLGRNFLHLTVQQPYGLKNLHPEFMQMQCIKELVMDEDNDGCTPLHYACR
QGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHG
MTPLHLAAKNGHDKVVQLLLKKGALFISDHNGWTALHHASLGGYTQTMKVILDTNLKCTD
RLDEEGNTALHFAAREGHAKAVALLLSYDADIVLNKQQASFLHVALHNKRKEVVLTAIRN
KRWDECLKVFSHHSPSNKCPIMEMVEYLPECMKVLLDFCIVPSTGDKSCRDYHIEYNFKY
LRCPLSFTKKYAPVQDVTYEPLPILNVMVQHNRIELLNHPVCKEYLLMKWCAYGFRAHMM
NLGSYCLGLIPMSLLVVNIKPGMAFNSTGIINATSDHSEILDTTNSYPIKVCMILVFLTS
IFGYCKEVAQIFQQKKNYFMDYGNLVEWIIYTTSIVFVLPLFVSIPAYMQWQCGAIAIFF
YWMNFLLYLQRFEYCGIFIVMLEVILKTLLRSTVVVVFLLLAFGLSFYVLLSAQDAFSSP
LLSIIQTFSMTLGDINYRDAFLEPYLRDELAYPVLSFAQLIAFTMLVPIVLMNLLIGLAV
GDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQESTIVYPNRPRYQGTLSRVLQ
YIFYINETRQEVPNTDTCLEMEILKQKYRLKDLTSLLEKQHDLIKLIIQKMEIISETEDE
DNHCSFQDKFKREQLEQMNSKWNSVLRAVKTKMHNLSVSYPDFQ
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagcctgaggaagatgctgcgggctggggagaagtcgccccacggcgttgac
taccaggacgtggagaacaacaaggacgactccaaaaacattgaggtagattttgaagac
aatgaatggggattccaacagtctaccaagaaccgaaagaaagtaagcgaagatgatgag
aacgtctctcctctgcatcatgccgcagcagaaggtcaagttgaactgatgaagatgatt
atcagtgactcctcttgtgaagtgctgaatgtaatggatgattatggaaatacccctcta
cactgggccacagaaaaaaaccaggttgaaagcgttaagtttcttctcagcaaaggagca
aaccccaatcttcgaaacagcagcatgatggcgcctcttcacatagcggtgcagagcatg
cacaatgaggtggtgaaggtgttgactgagcacaatggaacggatattaatttggaagga
gaaaatggaaacacagctctgataactgcatgttccaaagataacagtgaagcattacaa
atgttgttacaaaagggtgcaaagctatgcaaatcaaataaatggagatgttttcctgtt
cacctcgctgccttttcaggtgctaaaaaatgcatggaattaatattggagtttggtgag
aaacgcgggtaccgcagagagtctcagataaactttgtgaacactgggaaagccagcccg
ctgcacttcgcggttcagagtggtgacttggaaatgattaaattgtgcctggacaatggt
gcacgcatagacctgaaggagaatgggaagtgcatgccgcttcactttgctgccacccag
ggagccactgagattgttaaactgatgatatcttcctattctggtagtagtgatatcgtt
aatgcagtcgatggaaatcacgagaccctacttcacagagcctcattatttgatcaccat
gaactagctgaatacttaatatcagtgggagctgacattaatatcaccgatgctgaagga
cgctctccacttatgttagcaactgcttctgcatcttggagcactgtaaatttactgctt
tctaaaggtgctcatgtagatataaaagatcatcttggacgtaattttttacatttgact
gtgcagcaaccttatgggttaaaaaatttgcatcctgaatttatgcagatgcaatgtatt
aaagagctggtaatggatgaagacaatgatggatgtactcctttacattatgcttgcaga
cagggagtccctgtctctgtaaataacctacttggctttaatgtgtccattcattccaag
agcaaagataagaaatcacccctgcactttgcagccagttatggacgtatcaacacctgt
cagaggctcctccaagacataagtgatacgaggcttttgaatgaaggtgaccttcatggg
atgactcctctacacctggcagcaaaaaatggacatgacaaagtagtgcagcttcttctg
aaaaagggtgcactgtttatcagtgaccacaatggctggactgccttacatcatgcttcc
ttgggtggatacactcagaccatgaaggtcattcttgatactaatttgaagtgcacagat
cggctagatgaagaagggaatactgcgcttcactttgctgcgagggagggccacgccaaa
gctgtggcgcttcttctgagctacgatgccgacatcgtcctgaacaagcagcaggcctcc
tttctgcacgtggcacttcacaataagaggaaggaggtggttctcacagccatcaggaac
aaaagatgggatgaatgtttaaaggtttttagtcatcattctccaagcaataaatgtcca
atcatggaaatggtagaatatcttcctgaatgcatgaaagtactgttagatttctgcata
gtgccttccacaggagacaaatcctgccgagattaccatatcgagtataattttaagtat
cttcggtgtccattatcattcactaaaaaatacgcacctgtacaggatgttacatatgag
cctcttcctatcctaaatgtaatggtacaacataaccgtatagaacttctcaatcatcct
gtgtgtaaagaatatttacttatgaaatggtgtgcttatggatttagagcccatatgatg
aacctaggatcttactgccttggtctcatacccatgtccttgcttgttgtcaatataaag
ccaggaatggctttcaattcaactgggatcatcaatgcaactagtgatcattcagaaata
ttagacaccacgaactcatatccaataaaagtttgtatgattttagtttttttaacaagt
atatttggatattgcaaagaagtggctcagattttccaacagaaaaagaattattttatg
gattatggtaacttggttgaatggattatttacacaaccagcatagtttttgtgctgccc
ttgtttgttagcataccagcttatatgcagtggcaatgtggagcaattgcaatcttcttc
tattggatgaactttttattgtatcttcaaagatttgaatattgtggaatttttattgtt
atgttagaggtaattctgaaaactttattaaggtctacggtagtagttgtcttcctcctg
ttggcctttggactcagtttttacgtcctcctgagtgcacaggatgccttcagctcgccg
ttgctttctataatccagaccttcagcatgacattaggagatatcaattatcgagatgcc
ttcctagaaccatatttgagagatgaattggcatatccagttctgtcctttgcacaactt
attgccttcactatgttagtcccaattgtcctcatgaatttacttataggtttggcagtt
ggtgacattgctgaggttcaaaaacatgcatcattgaagaggattgctatgcaggtggaa
cttcataccagcttagagaaaaagctgccactctggttcctacgcaaagtggatcaggaa
tccaccattgtatatcccaacagacccagatatcaggggacattatcacgtgtacttcaa
tatattttttacatcaatgaaaccagacaagaagtgccaaatactgatacatgtttagaa
atggaaatactgaagcagaaataccggctgaaggatctcacttctctcttggaaaaacag
catgacctgattaaactcatcatccagaagatggagatcatctctgagacagaggatgaa
gataaccattgttcttttcaagacaagtttaaaagagagcaactggaacaaatgaatagt
aaatggaattctgtgttgagagcagtaaagaccaaaatgcacaaccttagtgttagttac
ccagactttcaatag
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